Query= MSMg01no389_h22.b1 MSMg01no389_h22.b1 CHROMAT_FILE:
MSMg01no389_h22.b1 PHD_FILE: MSMg01no389_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:07 2005
(451 letters)
>mm_chr1_154139835_154140685
Length = 851
Score = 743 bits (384), Expect = 0.0
Identities = 429/454 (94%), Gaps = 18/454 (3%)
Strand = Plus / Plus
Query: 1 ggaattcttatatg---tccctgaaagtaccctggaaaataccagaagaatggacactgc 57
|||||||||||||| | ||||||||||||||||||||||| ||||
Sbjct: 213 ggaattcttatatggggt---tgaaagtaccctggaaaatacca------------ctgc 257
Query: 58 tttaagggaagatatctgaggcaggatgaacaaaactttaccaatctcagttctttttcc 117
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 258 tttaagggaagatatctgaggcaggatgaacaaaactttaccagtctcagttctttttcc 317
Query: 118 tcttcatgaatcattggttgggagagaagagaagagaaagtaagagtgggaagggagaag 177
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tcttcacgaatcattggttgggagagaagagaagagaaagtaagagtgggaagggagaag 377
Query: 178 acaaagaccccatgttgggttcaggtagcttcatgtggccactaggacctgggaacttga 237
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 378 acaaagaccccatgttgggttcagggaggttcatgtggccactaggacctgggaacttga 437
Query: 238 gttgaaccctgacccttcacttccataccatccaggtaaaccacagttgaatcttggtca 297
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 438 gttgaaccctgacccttcacttccataccatccaggtaaaccacagttgaaccttggtca 497
Query: 298 atagcaagctcactggattgctgagagctgatgtactttaggaacttagtacagtctggc 357
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 498 atagcaagctcactggattgctgggagctgatgtactttaggaacttagtacagtctggc 557
Query: 358 atagatggagcatgcacaaggtcatgtgcattcctcccttgcttctcacctcagacaata 417
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 558 atagatggagcatgcacaagatcatgtgcattcctcccttgcttctcacctcagacaata 617
Query: 418 tttggaaagatgtcacagctttgaaaaaagcatc 451
||||||||||||||||||||||||||||||||||
Sbjct: 618 tttggaaagatgtcacagctttgaaaaaagcatc 651
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space: 370881
Effective search space used: 370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no389_h22.g1 MSMg01no389_h22.g1 CHROMAT_FILE:
MSMg01no389_h22.g1 PHD_FILE: MSMg01no389_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:07 2005
(396 letters)
>mm_chr1_154311636_154312431
Length = 796
Score = 603 bits (312), Expect = e-177
Identities = 368/398 (92%), Gaps = 22/398 (5%)
Strand = Plus / Minus
Query: 2 aggccagcctggtctacagagtgagtatcaggatagccagggctacacagaaaaaaaaac 61
||||||||||| ||||||||||||||| |||||||||||||| |||||||||
Sbjct: 755 aggccagcctgttctacagagtgagtaccaggatagccagggttacacagaa-------- 704
Query: 62 aaaaaaacaaaaaaacctgtctcgaaa-aacaaaaacaaa--caaacaaacaaaaaaaac 118
||||||||||||||| ||| |||||||||||| ||||||||| |||||||
Sbjct: 703 --------aaaaaaacctgtctc-aaagaacaaaaacaaaaccaaacaaac--aaaaaac 655
Query: 119 aaaaacaaaagcacacacaaacacacacacaaaacaaaaacaaacaacaacaacaaaacc 178
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 agaaacaaaagcacacacaaacacacacacaaaacaaaaacaaacaacaacaacaaaacc 595
Query: 179 ctagatattctaactgattaaaagtttattgaaatacatagactttgggtctggttactc 238
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 594 ctagatattctaacttattaaaagttcattgaaatacatagactttgggtctggttattc 535
Query: 239 ttggtgtgtgatgttttctagctgcaaggttttttttttcccctcttaattatgaagttc 298
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 534 ttggtgtgtgatgttttctagctgcaaggtttttttttccccctcttaattatgaagttc 475
Query: 299 atcaaaatagatacttgaattaaaagcagccttattaaaaacatcactcaaaaggtaaga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 atcaaaatagatacttgaattaaaagcagccttattaaaaacatcactcaaaaggtaaga 415
Query: 359 gccaactgtggagtactaagtgtctatttgaaagtggg 396
||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gccaactgtggagtactaagtgtctatttgaaagtggg 377
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space: 304569
Effective search space used: 304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
