BAC Information

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BAC

Clone NameMSMg01-389J11
Chromosome1 (Build37)
Map Location 122,253,238 - 122,253,519
singlet/doubletsinglet
Overlap genenone
Upstream geneInhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2
Downstream geneMarco, En1, AI848258, Insig2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389J11.T7 (MSMg01no389_j11.b1)MSMg01-389J11.TJ (MSMg01no389_j11.g1)
ACCAG491809AG491810
length781794
length of high quality
(start - end)
63 (259 - 321)321 (86 - 406)
definitionCHROMAT_FILE: MSMg01no389_j11.b1 PHD_FILE: MSMg01no389_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:15 2005CHROMAT_FILE: MSMg01no389_j11.g1 PHD_FILE: MSMg01no389_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATAATTTGNGGNCGNTATANGAATCACTATTTCACACACGATCC
GCNGGAATCTCTCCTTCNCCTGACTCTGTCTCTGTCTCCCCACCCCCCAC
CCCCTGGCCCAAGATCTTCCTCTATAGCTCAGTTTGCCCCAACTCTTATC
TAATGTCAGAGGCAGCTACACTGTGATGTGATGGCTGAATGCTGTCTGTC
TTTGTCTTTTACAAACATCTCTGGCTGAGCACTGTGGTGTTTTCCTATTT
GGGATATCTGAATTCAAGACCAGTCTGAACAAATTAGTAAGACTTTAAGA
TCAAAAACCAGCAAACGCACGTTTCTCTTTTACCTGAAATCCCAGCATGT
GGGAAGCTGGGGTCATAAGGTTCGCCCTGAGTTCAAAGCTAGCCTGCACT
AAGGCATGAAACCCCCTAAAAGAAAGGGCGTATCAGTCGCTTGTTTACTT
TGTAAGCATGGAGCCTGCGCTTGACATCTACATCTCCAGCATAAAACTGG
TCTTGGGCTGAACAGATAACTCACTAGCTACGATTTTCTTCCCGTTGCCC
TCGTTCTGTTTTTCCAGATCTTGTTTCTCTGCCTGTCCCCCCCCCTCCTT
TCCCCCTCCCTTTCTCTTCCCTCCCCCCCCTTTCCTCCCTTTCTTCCTTC
TCCCTTCCCTCTTTTCCTCTCCTTACCTCCGTCTTTACCTCCACTCCTCC
TCCCCCTCCCTTTTTTTCCTCCCCCTTTCTCCTCCTCCTTTTCTTCTCCC
CTCCCCTTCCTCCCTTCCCCGTTTTCTCCTT
NNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCAGATTGGGGTGT
GTGGGGGGACTCAAGTGTAAACTATACATTGGGTCACAGGGCTAAGCACA
TGGCTCTTAGCCTCGGGTATTAGACTATGACTCCCTCCTATCAAGACTGA
TACTGTGTGTGGTGGTGCTGGCCTGTCTGGAGCACATGGAAGCTGAAGGC
AGGAGCTGATGGTTAGCCTTGGCTATATAACAAGAGGCCAGCCTGGAATA
CATGAAATCCTGTCTCGAAAGCAGTGTAATCATTGATATAATTGATCTTT
CTGTTCCTTGATGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTNTNTNNNTNTNTTNCCCCCCCCCTCTTTTTCCTCTCTTCCCCCTC
CCTCCTTTTCTCCCCCCTTTCCCCCTCCTCCCTTTTTTCCCTTCCCTCTC
CTCCTTTCTCCTTTTCCTTTCCCCCTCTTCTCTCCTTTTTCTTTCTCCCC
CCTTTTTTCTCCCTCCCTCCCCCTTCCTCCCTTTCCCTTCCCTTTTTTTT
CCCCCCCCCCCTCTCTTTCCCCCCCTTTCTCCCCCCCCTTCCTCCTTTTC
TTTTCCCCTCCCCCTCTTTTTCCCCTCCTCTTTTTTTTTTTTTTTTCTCC
CCCCCGCCCTGCCTCCTCCCCTCCTTGGTTGCCGCCCGGCTTCCCCCTGG
CCTCTTTTTGTTTTCTCGCCTCCCCTCGTTCTTCCCCTCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_j11.g1 MSMg01no389_j11.g1 CHROMAT_FILE:
MSMg01no389_j11.g1 PHD_FILE: MSMg01no389_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:15 2005
         (321 letters)



>mm_chr1_122253202_122253923
          Length = 722

 Score =  455 bits (235), Expect = e-132
 Identities = 279/315 (88%), Gaps = 34/315 (10%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccagatt-ggggtgtgtggggggactcaagtgtaaactatacattgggtcacagggcta 59
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cccagattgggggtgtgtggggggactcaagtgtaaactatacattgggtcacagggcta 259

                                                                       
Query: 60  agcacatggctcttagcctcgggtattagactatgactccctcctatcaagactgatact 119
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agcgcatggctcttagcctcgggtattagactatgactccctcctatcaagactgatact 199

                                                                       
Query: 120 gtgtgtggtggtgctggcctgtctggagcacatggaagctgaaggcaggagctgatggtt 179
           |||||||||||||||||||||||||||||||                             
Sbjct: 198 gtgtgtggtggtgctggcctgtctggagcac----------------------------- 168

                                                                       
Query: 180 agccttggctatataacaagaggccagcctggaatacatgaaatcctgtctcgaaagcag 239
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ----ttggctatataacaagaggccagcctggaatacatgaaatcctgtctcgaaagcag 112

                                                                       
Query: 240 tgtaatcattgatataattgatctttctgttccttgatgtcgtgtgtgtgtgtgtgtgtg 299
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 tgtaagcattgatataattgatctttctgttccttgatgtcgtgtgtgtgtgtgtgtgtg 52

                          
Query: 300 tgtgtgtgtgtgtgt 314
           |||||||||||||||
Sbjct: 51  tgtgtgtgtgtgtgt 37


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 722
Length adjustment: 9
Effective length of query: 312
Effective length of database: 713
Effective search space:   222456
Effective search space used:   222456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)