BAC Information

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BAC

Clone NameMSMg01-389L05
Chromosome1 (Build37)
Map Location 67,336,862 - 67,337,356
singlet/doubletsinglet
Overlap genenone
Upstream geneMtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
Downstream geneKif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389L05.T7 (MSMg01no389_l05.b1)MSMg01-389L05.TJ (MSMg01no389_l05.g1)
ACCAG491893AG491894
length765762
length of high quality
(start - end)
313 (77 - 389)495 (76 - 570)
definitionCHROMAT_FILE: MSMg01no389_l05.b1 PHD_FILE: MSMg01no389_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:24 2005CHROMAT_FILE: MSMg01no389_l05.g1 PHD_FILE: MSMg01no389_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATC
CGCGGAATTCTTTGATCTACCTAGACTTGAGCTTTGTACAAGGAGATAAG
AATGGATCAATTCGCATTCTTCTACATGATAACCGCCAGTTGTGCCAGCA
CCATTTGTTGAAGATGCTGTCTTTTTTTCCACTGGATGGCTTTAGCTCCC
TTGTCAAAGATCACGTGACCAGAGGTGTGTGGGTTCATTTCTGGGTCTTC
AGTTCTATTCCATTGGTCTACCTGTCTGTTGCTATACCAGTACCATGAAG
TTTTTATCACAATTGCTCTGTAGTACAGCTTTAGGTCAGGCATGGTGATT
CTCCCAGAGGTTCTTTTATTGTTGAGAAAAGTTTTTGCTATTCTAGGTTT
TTTGCTATTCCAGATGAATTTGCAAATTGTCCTTTCTAATTTGATGAACA
ATTGAGTTGGAATTCTGACGGGGACTGTACCCAATCTGTACCCTGCTCTT
GTCAAGACAGCCCTCTTCACTATATCCACCCCGCCCCTCCATGATCCCCG
TCAAACTCTCTCCCCCTTCGAGATTTCCCCCCATTCCCCCCTTCCCAAAT
CTCCACCCTTTCTCTTCCCCGATCCCCCCATCTCCCCTTTCATCTTTCCC
CCCCCTCTTTTCCCTCCCTTCCCCCCCTTTCCCTCACCGTTCCTCCCCCC
CCCTTTTTCCTTCCCTTCCCTCCCTCCTTTCTTCCCCCTCCATACCCCCA
TCCCCCCTTTCCCTT
NCCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCTAATTTTGCTTCCATTCTAGGT
TCTTCATGGCTTCTGTGAAGCCCTCTTCAGAGCTTGTATTTTTAAGTTGT
CCTTCTAAATTCCAGCAGACAGAAAGCTTTGAAATGGCATCAACTGAGTG
GTGAGAGTTACTTGGCCATGTTGCACAATTGAGTACTGTCAGTCTTGACT
GAGAATAGCGGACGATATTGCTTCTCCTTAAAACAAAGCAAGAATGCTTT
CTACTTAAAGGAGGGAGCCCAAGAGAGTCTTAGCCAAATGTTTTTCAGTA
TCATTTGGCTTCCTTATGGAGACTTGAAGAGTTCCTGTAGTTTTATTACT
GACAGAGAGCACCTGAGAGGCTAACTAATTTCAAAGATTCAGCTTTTCTG
CTTTGTTTAATAAAAGCCATAAAATCCACCTGGGTAGGAAATTTAAAGAT
TAAAAAAAAACAACAACAACTAATTAAACTTAATTGGGTCAGTCTGGGCA
GGCTGATTATCCTGTTTGATTGGTCTCCTGAGGATCCTATCTTGGCTTCA
CCAACTACCACGGCCAAGGAAAGAGGAAAGTGATGCTAGATGCTGCCCTC
CTTTTCACAAAAGGGGGCATTTTTAGTAAGAAAACCAAGGGGAAATAAAG
GTTTGATAACAGGATGCGTCGCACACACTATTGGTATTATCCTCCCATCC
ACTTCCCTAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_l05.g1 MSMg01no389_l05.g1 CHROMAT_FILE:
MSMg01no389_l05.g1 PHD_FILE: MSMg01no389_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:24 2005
         (495 letters)



>mm_chr1_67336662_67337556
          Length = 895

 Score =  934 bits (483), Expect = 0.0
 Identities = 492/495 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctaattttgcttccattctaggttcttcatggcttctgtgaagccctcttcagagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 atctaattttgcttccattctaggttcttcatggcttctgtgaagccctcttcagagctt 636

                                                                       
Query: 61  gtatttttaagttgtccttctaaattccagcagacagaaagctttgaaatggcatcaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gtatttttaagttgtccttctaaattccagcagacagaaagctttgaaatggcatcaact 576

                                                                       
Query: 121 gagtggtgagagttacttggccatgttgcacaattgagtactgtcagtcttgactgagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gagtggtgagagttacttggccatgttgcacaattgagtactgtcagtcttgactgagaa 516

                                                                       
Query: 181 tagcggacgatattgcttctccttaaaacaaagcaagaatgctttctacttaaaggaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tagcggacgatattgcttctccttaaaacaaagcaagaatgctttctacttaaaggaggg 456

                                                                       
Query: 241 agcccaagagagtcttagccaaatgtttttcagtatcatttggcttccttatggagactt 300
           |||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 agcccaagagaggcagagccaaatgtttttcagtatcatttggcttccttatggagactt 396

                                                                       
Query: 301 gaagagttcctgtagttttattactgacagagagcacctgagaggctaactaatttcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gaagagttcctgtagttttattactgacagagagcacctgagaggctaactaatttcaaa 336

                                                                       
Query: 361 gattcagcttttctgctttgtttaataaaagccataaaatccacctgggtaggaaattta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gattcagcttttctgctttgtttaataaaagccataaaatccacctgggtaggaaattta 276

                                                                       
Query: 421 aagattaaaaaaaaacaacaacaactaattaaacttaattgggtcagtctgggcaggctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aagattaaaaaaaaacaacaacaactaattaaacttaattgggtcagtctgggcaggctg 216

                          
Query: 481 attatcctgtttgat 495
           |||||||||||||||
Sbjct: 215 attatcctgtttgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)