BAC Information

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BAC

Clone NameMSMg01-389M05
Chromosome1 (Build37)
Map Location 69,056,821 - 69,057,288
singlet/doubletsinglet
Overlap geneErbb4
Upstream genenone
Downstream geneLOC667842, EG241084, Ikzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389M05.T7 (MSMg01no389_m05.b1)MSMg01-389M05.TJ (MSMg01no389_m05.g1)
ACCAG491941AG491942
length746746
length of high quality
(start - end)
468 (74 - 541)74 (176 - 249)
definitionCHROMAT_FILE: MSMg01no389_m05.b1 PHD_FILE: MSMg01no389_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:28 2005CHROMAT_FILE: MSMg01no389_m05.g1 PHD_FILE: MSMg01no389_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCTACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAGAGGATC
CGCGGAATTCTATATTTCCTAATGATATTTTTTTATAAATAGACTGATAT
GATACTTCCCCAAGACAATATAAAAATTATCTTTTATACTACAAACCCCA
AGCTTGTTCACAATTATTTCCAGGTTCTTTTGTACAAATTGAGGAACTCA
AAATGAGATTGAAAGTGTCCTTTAGGTTTCTAGGGGGAAAAAAAGTATGA
TAAAGGCCAGGGGCAACTGGTGAATCATTTGGATGTTGGCTTTATTAACT
CCAAGCACCAGCAGTGACAATATGATGAACTGTCATCTGTACCTTAAACT
CTCACCCTTGCCTTTCATTTGCAAATGAGCAAGCAAGTGGCCTGTTTTGA
ACACATGGACCATTAACTGTCTCCTTCTATTTGCATAGCAATGATAGTGA
ACGGCTGGTGATTTACTGCTCTGACTAGCATCATAAATAACAGATCATTT
ACGCTGCTAATTATACTCATTTCCATATCAATAATGCATTCTGGGCTGGG
CTGGACTATGGCATTACAATGGAATGGAACGACAAATTGATTCTCTTCTA
ACATGCTGTACAACAGCGTATTTATTACAAGAGTATACTATTCCGTACCG
TACATAAGTGCCCCAGACATTTTTCTACCTAACCCTGCTGACTGCATCCC
ACCCAGCACCCCTTCACCGAAACAACATTTACCCCCCGCCCAAGGC
CCCCGATGAACTGGGAGGCCTGGNGGNNGCCTGGTGGCCATTTGATGTGA
ANNANAGAAGGTAACATGCAACCCGCTCNGGAAAANGGATCCTTCTACGG
NAAAGCTTTTATACATATTGAACACCCCGAACCCGGAAAATGGCGCTGCT
TATATAGCCTGCAGTGTGACGGTTCAGCACCTGATGTGACATGACAGCAC
CTGATTAGTTGCTTGCCCATCACCCCATCACTACGCCCCAAGACGGGCAT
TGTCTAGGCGTGAATTTACTCTTGTAAGGCTTGTTTACTAGTTACACGCA
GTGGAAGCCAGCGCCATCTTTTTTTGGTGANGGCTCACGGCACGGCTGGC
CACAGCGTTATTTATGACAATCTCAGAAGATGTGGTCGATAATCTAAACA
CTTGTGTTAAAATTCTACCTTTTTCATTCTTCATGTGCTTAATTTTATAT
TTTATGCGCATTAACAAAGATTTATGAGTTTTTCTGCCGCATACGCCAAA
AGACCATACTAGTTAGGCCTTCCATATTCAGAAAACTCCAATTTCTTTGA
TACCTACCCCTTAACCCTTCTTTCGACAAAAAATGACCCACATACACTTG
ACGCACTTTGCACCCCGTTTCCTCCCCTTTTACCCCCTATGCTCACCCAC
TCCGCACTTTTTTTTCTTTTTTACCCCCACTAACGCTCACTTCTTCCCTT
TCGACCGCCCGCAACCCCCCCTTTCCATTCTCCCCCACCCCTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_m05.b1 MSMg01no389_m05.b1 CHROMAT_FILE:
MSMg01no389_m05.b1 PHD_FILE: MSMg01no389_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:28 2005
         (468 letters)



>mm_chr1_69056621_69057488
          Length = 868

 Score =  882 bits (456), Expect = 0.0
 Identities = 465/468 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatatttttttataaatagactgatatgatacttccccaagacaatataaaaattatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gatatttttttataaatagactgatatgatacttccccaagacaatataaaaattatctt 609

                                                                       
Query: 61  ttatactacaaaccccaagcttgttcacaattatttccaggttcttttgtacaaattgag 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 608 ttatactacaaaccccaagcttgttcacaattatttccagtttcttttgtacaaattgag 549

                                                                       
Query: 121 gaactcaaaatgagattgaaagtgtcctttaggtttctagggggaaaaaaagtatgataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gaactcaaaatgagattgaaagtgtcctttaggtttctagggggaaaaaaagtatgataa 489

                                                                       
Query: 181 aggccaggggcaactggtgaatcatttggatgttggctttattaactccaagcaccagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aggccaggggcaactggtgaatcatttggatgttggctttattaactccaagcaccagca 429

                                                                       
Query: 241 gtgacaatatgatgaactgtcatctgtaccttaaactctcacccttgcctttcatttgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gtgacaatatgatgaactgtcatctgtaccttaaactctcacccttgcctttcatttgca 369

                                                                       
Query: 301 aatgagcaagcaagtggcctgttttgaacacatggaccattaactgtctccttctatttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aatgagcaagcaagtggcctgttttgaacacatggaccattaactgtctccttctatttg 309

                                                                       
Query: 361 catagcaatgatagtgaacggctggtgatttactgctctgactagcatcataaataacag 420
           ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 308 catagcaatgatagtgaacggttggtgatttactgctctgactagtatcataaataacag 249

                                                           
Query: 421 atcatttacgctgctaattatactcatttccatatcaataatgcattc 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atcatttacgctgctaattatactcatttccatatcaataatgcattc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)