BAC Information

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BAC

Clone NameMSMg01-389P06
Chromosome1 (Build37)
Map Location 148,460,846 - 148,461,135
singlet/doubletsinglet
Overlap geneB830045N13Rik
Upstream geneLOC383571
Downstream geneLOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389P06.T7 (MSMg01no389_p06.b1)MSMg01-389P06.TJ (MSMg01no389_p06.g1)
ACCAG492084AG492085
length768766
length of high quality
(start - end)		289 (82 - 370)527 (79 - 605)
definitionCHROMAT_FILE: MSMg01no389_p06.b1 PHD_FILE: MSMg01no389_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:43 2005CHROMAT_FILE: MSMg01no389_p06.g1 PHD_FILE: MSMg01no389_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGCGTCTATAATTTGCGGCCGCTAAAAGAANTACTATTCCCAACACGAG
GCGNGGAATTNNCACTCTTCCTTTAAGCAAAAAAGAATGATGTTTTGTGA
AGACAGATGCTGTACCTGGACAGATAGATAATAAAGCTGTAAAACAACAG
TTAAAAGCACTGACATAGAGAATATAAAAATCCTTAGCTTTGCAGAGAAG
CAATCTTTTTATAATCTAGAGGCTGTCACACAGATCATGATAAGATAACT
ATAGCTACTAAAAGGACAGTAAACCTAGACTGAAAATCACATGATACTTT
TTTGATCCAACATCTTCCTGATTATTATTGTCTTCTACAGTCATACTATA
CTCTTGTATTTTATTTTTAACACCACAGTATAACTAAATCATTTGTCCCT
TCACACCTTTCCATCTAGCCTTACTTGTTCTCTTCTGTACCCCGGACCTC
TTTTTTCCTTTTGTATATGCACACACACGCATTTATGTATTTATTCCCAA
GTATCACTTCCCACACCTTCTCCACCTATCTGCATACCTCTTACATCCCC
TATACTACTCTCTATATCCATCCCACCCCTCTCCTCTTCTCCCACCCCCC
CTCCTCCCCACCCCTCGCGTATGACCTCCTGTACCCCTTCCGCCTCCCCC
TCCCCTCTTTTCCCCGTTTGTTTCCCCTTCCCTTTCTCCCTCCGCCATCC
CCCTCCCCCTCCTTCCCCCTCTCCCCCCCCCTTCCTGCCCCTTCCCACCC
CCCTCCCCTCCCCTTCCN

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACCTGAAAAAATGTTCAACATCCTTACTCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATAGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGACGTGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACCCTGG
AAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGA
TCCAGCAATACCTTTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTA
AGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA
TATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTTTGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCTTG
AGTGAGGTAACACATTCACAAAGGAACTCCCACAATATGTACTCCCTGAT
AAGTGGATATTAGCCCCAAACCTAAGATACCCCAGAAATTAGATACCATT
TCCTAAATCCTTGTAACTAAAGAAAAATGAAGACTGAAGTGGGGGACCCC
ATGGCCCTCCCTTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_p06.b1 MSMg01no389_p06.b1 CHROMAT_FILE:
MSMg01no389_p06.b1 PHD_FILE: MSMg01no389_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:43 2005
         (289 letters)



>mm_chr1_148460646_148461335
          Length = 690

 Score =  493 bits (255), Expect = e-144
 Identities = 282/291 (96%), Gaps = 3/291 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagaatgatgttttgtgaagacagatgctgtacctggacagata-gataataaagctgt 59
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 201 aaagaatgatgttttgtgaagacagatgctgtacctggacagataggttaataaagctgt 260

                                                                       
Query: 60  aaaacaacagttaaaagcactgacatagagaatataaaaatccttagctttgcagagaag 119
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagacaacagttaaaagcactgacatagagaatataaaaatccttagctttgcagagaag 320

                                                                       
Query: 120 caatctttttataatctagaggctgtcacacagatcatgataagataactatagctacta 179
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 caatctttttataatctagatgctgtcacacagatcatgataagataactatagctac-a 379

                                                                       
Query: 180 a-aaggacagtaaacctagactgaaaatcacatgatacttttttgatccaacatcttcct 238
           | |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 380 acaaggacagtaaacctagactcaaaatcacatgatacgtttttgatccaacatcttcct 439

                                                              
Query: 239 gattattattgtcttctacagtcatactatactcttgtattttatttttaa 289
           |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gattataattgtcttctacagtcatactatactcttgtattttatttttaa 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space:   190680
Effective search space used:   190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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