Query= MSMg01no390_f04.b1 MSMg01no390_f04.b1 CHROMAT_FILE:
MSMg01no390_f04.b1 PHD_FILE: MSMg01no390_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:12 2005
(585 letters)
>mm_chr1_80219941_80220925
Length = 985
Score = 978 bits (506), Expect = 0.0
Identities = 574/614 (93%), Gaps = 31/614 (5%)
Strand = Plus / Plus
Query: 1 tcattttgttaagataataatggtgttataattaagtagggatgatgtccttccttttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattttgttaagataataatggtgttataattaagtagggatgatgtccttccttttta 260
Query: 61 gaggagaaatgtcattttatctgtgatattattaggacaaatactgggttaaatgaccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggagaaatgtcattttatctgtgatattattaggacaaatactgggttaaatgaccta 320
Query: 121 tctgtcatgtcactctgttcattggccgcagagaaatccttgcgacgcttctgggttggg 180
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 321 tctgtcatgtcactctgttcattggctgcagagaaatccttgcgacgtttctgggttggg 380
Query: 181 agggataactattcactggcacctc-tctaattggtttataatgtccattgacttgtagc 239
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 381 agggataactattcactggcacc-cgtctaattggtttataatgtccattgacttgtagc 439
Query: 240 aatctagcatcaggtagggcggcgaaaagaaatggagtatgttacagctgtgtcttagga 299
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 440 aatctagcatcaggtagggctgcgaaaagaaatggaatatgttacagctgtgtcttagga 499
Query: 300 tcttttgaaagaaaagattactaggagcagcagaggtgatggtctctctgtgaagtgctt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcttttgaaagaaaagattactaggagcagcagaggtgatggtctctctgtgaagtgctt 559
Query: 360 gctagctacacaagcctgatgacctaggttcagattcccaccagcacctacgtaaaaaaa 419
|||||||||||||||||||||||||| |||||||| ||||||||||||||| | ||||||
Sbjct: 560 gctagctacacaagcctgatgacctaagttcagatccccaccagcacctacattaaaaaa 619
Query: 420 aaaaagccaagt---gt-------------------------gggaaggtagagacagga 451
|||| ||||||| || ||||||||||||||||||
Sbjct: 620 aaaa-gccaagtctggtatcaaaggtttgtaattccagcactgggaaggtagagacagga 678
Query: 452 gaatctttggggctcacaggccaaccagtctaggcaggttcagggagagaccctgtctca 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaatctttggggctcacaggccaaccagtctaggcaggttcagggagagaccctgtctca 738
Query: 512 aaacaaaagtagaaaacactaaagacacccaacattaatgtctagccttcaaatgtaaca 571
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aaacaaaagtagaaaacactcaagacacccaacattaatgtctagccttcaaatgtaaca 798
Query: 572 cacacacacacaca 585
||||||||||||||
Sbjct: 799 cacacacacacaca 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no390_f04.g1 MSMg01no390_f04.g1 CHROMAT_FILE:
MSMg01no390_f04.g1 PHD_FILE: MSMg01no390_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:12 2005
(380 letters)
>mm_chr1_80394484_80395263
Length = 780
Score = 420 bits (217), Expect = e-122
Identities = 275/316 (87%), Gaps = 37/316 (11%)
Strand = Plus / Minus
Query: 72 gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagga 131
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 745 gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa 686
Query: 132 gaagaggaggaggaggaggaggaggaggaagaagaagaaataaggttttagcttantcca 191
||||| | |||||||||||||||||||||||||||| ||||
Sbjct: 685 gaaga--------------------a-gaagaagaagaaataaggttttagcttagtcca 647
Query: 192 aggaaatccctcagagcgcccatcatgccaaagtcttggttttatatagacagatgtttt 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 aggaaatccctcagagcgcccatcatgccaaagtcttggttttatatagacagatg---- 591
Query: 252 tttttt--t------tttctgaaggtcctgctatgatagctgcttccctcgagttcttga 303
|| | |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 590 ----ttactagccaatttctgaaggtcctgctatgatagctgcttccctcgagtttttga 535
Query: 304 aacaatgattctaatggagatgaccctttatcttagggtgatgcataaatgtctgttgta 363
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 534 aacaatgattctaatggagatgacccattatcttagggtgatgcataaatgtctgttgta 475
Query: 364 ttctgtgcctctccac 379
||||||||||||||||
Sbjct: 474 ttctgtgcctctccac 459
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 116
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space: 286041
Effective search space used: 286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
