CCCCCCTCTATAATTTGGGCGCTAATAGAATACTATTTTCAGAAATCCGC
GGAATTCTTTGTTCTGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGAAGTCCACCCTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAGAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTATGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGT
TCTGTTCAGGAATCTTTCCCCTGTTCCTTTATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATATGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTG
ATCCACTTAGATTTGACCTTACCACAAGGAGATAAGTATGGATCGATTCG
CATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAA
TGCTGTCTTTCTTCCACTGGATGGCTTTAGCTCCCTTGCCGAACATCCAG
CGACCCTAGGTGCGCGGCCTCATCTCTGTGTCCCCAATTCCTATTCCATT
GGCCCACTTTGTCCGCCTTCTATCTCCCCACCCTGCCCCCTTTCTATCCC
CCCTCCCCCTGCCTTTTTTTTTTCTTCCGCCCCCGCCTTGTCCGAATTCC
TTTCCTACGCTTTCTTTCTATCTCCTTGCATCACAACCTTTTTTCT

TTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGCTTGTGTCTGTCTTAC
CTTCGCTAGCCTGAGTAGAGATTTAATAATGTATTGATCTTTCCAAAGGA
TGTGAGCATAATGCCCACTTCTTTTAATTCTATGGATTTCTACTTTAATT
TCATTGAATCTTTGTCTTCATTGGGATGAAATCATTCCTCATAAGATTGT
TCATTTATGCCTCTCTTAGCTTCTGACACATACAAAGCTGTATGTTTCCC
ATTAGCCACTGACTTTGCTGTGTCTCAGTATTTAATAATTTTTAGACTTC
AGTGCTTTTTTAGTGTAGGAGAAAGGGTCACACTTTTGCTTGTCTTACCC
CATTTTTAAAAAATTACATTCATTTATTTATTGTATGTGTGCAGGTGCCA
CAATGTGTCTTTTGAGATCAGAGGACAACTTTGGGGAGTTGGTTCTCTCC
TACTACCGTGTAGTTAGTTCTTAGGGGAGCAAGCTCATGTCCGCAGACTT
GGTGGCAAGGCCTGTATCAGCTGAGCCATCCTCCCAGACCCTCTTTTATT
TACATTAGTTACAGTTTTTAAACGCACTCTTGTTTTATTATTGCGCTATT
ATCAAATTATCCCCTTTTTGACCCTTTATGGACACCGATAAATACCTAAC
ATGTTTTGGAAAATTCTTCATTATAACCCTTTTTTTTTTTTG

Query= MSMg01no390_j16.g1 MSMg01no390_j16.g1 CHROMAT_FILE:
MSMg01no390_j16.g1 PHD_FILE: MSMg01no390_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:34 2005
         (544 letters)



>mm_chr1_87501681_87502623
          Length = 943

 Score =  975 bits (504), Expect = 0.0
 Identities = 534/544 (98%), Gaps = 1/544 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagcttgtgtctgtcttaccttcgctagcctgagtagagatttaataatgtattgatct 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagcgtgtgtctgtcttaccttcgctagcctgagtagagatttaataatgtattgatct 260

                                                                       
Query: 61  ttccaaaggatgtgagcataatgcccacttcttttaattctatggatttctactttaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccaaaggatgtgagcataatgcccacttcttttaattctatggatttctactttaatt 320

                                                                       
Query: 121 tcattgaatctttgtcttcattgggatgaaatcattcctcataagattgttcatttatgc 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 tcattgaatctttgtcttcattgggatgaaatcactcctcataagattgttcatttatgc 380

                                                                       
Query: 181 ctctcttagcttctgacacatacaaagctgtatgtttcccattagccactgactttgctg 240
           ||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 381 ctctcttagcttccgacacatacaaagctgtatgtttccccttagccactgcctttgctg 440

                                                                       
Query: 241 tgtctcagtatttaataatttttagacttcagtgcttttttagtgtaggagaaagggtca 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtctcag-atttaataatttttagacttcagtgcttttttagtgtaggagaaagggtca 499

                                                                       
Query: 301 cacttttgcttgtcttaccccatttttaaaaaattacattcatttatttattgtatgtgt 360
           | |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 500 cccttttgcttgtcttaccccatttaaaaaaaattacattcatttatttattgtatgtgt 559

                                                                       
Query: 361 gcaggtgccacaatgtgtcttttgagatcagaggacaactttggggagttggttctctcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcaggtgccacaatgtgtcttttgagatcagaggacaactttggggagttggttctctcc 619

                                                                       
Query: 421 tactaccgtgtagttagttcttaggggagcaagctcatgtccgcagacttggtggcaagg 480
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tactaccatgtagttagttcttaggggagcaagctcatgtccgcagacttggtggcaagg 679

                                                                       
Query: 481 cctgtatcagctgagccatcctcccagaccctcttttatttacattagttacagttttta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cctgtatcagctgagccatcctcccagaccctcttttatttacattagttacagttttta 739

               
Query: 541 aacg 544
           ||||
Sbjct: 740 aacg 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 943
Length adjustment: 10
Effective length of query: 534
Effective length of database: 933
Effective search space:   498222
Effective search space used:   498222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)