BAC Information

Click to search

BAC

Clone NameMSMg01-390P11
Chromosome1 (Build37)
Map Location 128,317,492 - 128,317,633
singlet/doubletsinglet
Overlap geneE030049G20Rik
Upstream geneActr3, Slc35f5, Lypd1
Downstream geneLOC383559, Mgat5, LOC667090
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390P11.T7 (MSMg01no390_p11.b1)MSMg01-390P11.TJ (MSMg01no390_p11.g1)
ACCAG492852AG492853
length754828
length of high quality
(start - end)
142 (181 - 322)138 (79 - 216)
definitionCHROMAT_FILE: MSMg01no390_p11.b1 PHD_FILE: MSMg01no390_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:02 2005CHROMAT_FILE: MSMg01no390_p11.g1 PHD_FILE: MSMg01no390_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTATTAGTCCTCATGTCACNANANGANNCCNACATCAACACCCACC
GCGGAANNNAGNATGATAACATCACCACAGAGGTNAANTGANTNTNAAGT
TCATGCACAAAATTGCTATTCTGTACAGGAACATTCCTTGACTTAAAATT
TGTGGAAGCCCTTTGTGAGAATAGACTTCATTCAGTTGATGGAGTTTTGT
GAACAGAGGTCTTTCCAGACTGTCCCTTCCTAAAACAGTGTCCTGTTACC
ATGTTTTTAGCCTGCAGGGGATCTTCCTGAAGGTTCCTGTCCCACCTGGG
GGTGGCTTTGTTAGAGTCTCTTATATTTTTAAATGGGTTTTTAGTGCAGT
GATCAATGGAAGATATCCCCACCACCTGGAATCAGAGGTGGGTTTTGCCC
TTGTGCCTGCCTCTCTCCCGCTGCCTCTGGGGCATTTCTGAAGAGTCTAC
TTTCTACTCAGAGTTGGTAGAGAGCCACTAAACGCATTGCTGTGACCCTT
CCAGATCCCCAGAGGAATTCTGACACCACAACCTGATACTGAACCCATAA
CTCTTTCCCCTTCAGTCCCCAGCCAGCGCTCAGATACTACTTACATCGCT
TTAATCTCCTACCCCCCACAACCCCATTTATAATTCTTCGCCCCCGCGAA
TTCCCGGCCCGTTTTTTTCTTCTGTTCCTCCTCCTCCACCTGACCCATCC
CTAATAAGTCCCTAGCATTTTACCCCTCACCCGCGCGCGTCATTAACTTC
TCCG
NNCCAACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATGAGTAAGCCTTTACAGTT
CACATGTTCTGGTTTTATGGATTTGCCTCCTCTCCTCTCCTCTCCTCTCC
TCTCCTCTCCTCTCCTCTCCTCGGGGGGGGTCTCCTCTCCTCTCCTCTCC
TCTCCTCTCCTCTCCTCTCCTCTCCTCGCCTCTCCTCTCGACTCCACGGC
CCTTTTTTTTTCTGGCCGTCTCCCTGTGCGCCCCGGCTCCGACCGGCTTC
TGGCCCCGCCGCGCGCATTTTCCGTCCTTTTGCACGAAACAGGCGGCAGA
AAGCGGCCGACTTTTTTTTCCCCCCCCCCCAGGGGCGGGGGGGGGGTTTC
TCTTTTTTTTTCCCCTGTTCCCCCCCCCCCCGACTACAAATACCCCCCTC
TCTTCTGATTCGCGGCTGGCATCGATCATCTCATCGCTCCTCCTTTTTTG
CCCGATTGCTTACTTCCATATTTCGCCGCTTTCGCCTCCTGTCAAATGCT
TCTCGTGCCGCCTCGCGTGTGGTCTTACCACCGCCGACGGTTTGCCCCTC
GCTCCCCCCTTTTATAGATCTTTTCTTCTCGTCTCTCCCGCGCCGTCCGG
TCTGCTCGGCGCCCGCCTCGGTGTCTGGTGTCACCGCGTATCGCGGGATA
CTAGGGTGCTACGCCCCTTTCTTTGTTTTGAGTACCATTAGTCTACCCCC
TACCGGGCCGCGCGGTGTGTCTTCGTCCGTACCTGCGTCCCTGCGTTTGT
CCGTTTTCGTTCACTCTTTGTGTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_p11.b1 MSMg01no390_p11.b1 CHROMAT_FILE:
MSMg01no390_p11.b1 PHD_FILE: MSMg01no390_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:02 2005
         (142 letters)



>mm_chr1_128317292_128317833
          Length = 542

 Score =  244 bits (126), Expect = 2e-69
 Identities = 138/146 (94%), Gaps = 8/146 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagttgatggagttttgtgaacagaggtctttccagactgtcccttcctaaaacagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagttgatggagttttgtgaacagaggtctttccagactgtcccttcctaaaacagtg 260

                                                                       
Query: 61  tcctgttaccatgttttt----agcctgcaggggatcttcctgaaggttcctgtcccacc 116
           ||||||||||||||        ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctgttaccatgt----gaaaagcctgcaggggatcttcctgaaggttcctgtcccacc 316

                                     
Query: 117 tgggggtggctttgttagagtctctt 142
           ||||||||||||||||||||||||||
Sbjct: 317 tgggggtggctttgttagagtctctt 342


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 542
Length adjustment: 8
Effective length of query: 134
Effective length of database: 534
Effective search space:    71556
Effective search space used:    71556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)