BAC Information

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BAC

Clone NameMSMg01-391A23
Chromosome1 (Build37)
Map Location 68,292,332 - 68,326,717
singlet/doubletdoublet
Overlap geneErbb4
Upstream geneKif22-ps
Downstream geneLOC667842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391A23.T7 (MSMg01no391_a23.b1)MSMg01-391A23.TJ (MSMg01no391_a23.g1)
ACCAG492924AG492925
length766834
length of high quality
(start - end)		418 (45 - 462)195 (73 - 267)
definitionCHROMAT_FILE: MSMg01no391_a23.b1 PHD_FILE: MSMg01no391_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:09 2005CHROMAT_FILE: MSMg01no391_a23.g1 PHD_FILE: MSMg01no391_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,292,332 - 68,292,749)(68,326,524 - 68,326,717)
sequence
GCGGCGCTXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTAAAT
TTAAAAACTACTTTTCTTTTCATTTATTATTGATATTTTTTCTTAAGGAA
AATAGCAGTTATTAACTGACTTTGGAAGCTCATTCCTACAATATAGGGCT
TTAAAAGACTCTGGAATGTTTACTTCTAAAATGGTCTATAAAATGACCAA
ATATATATGGATAAATAGGTAATTGAATTAAATATTGTCAACTTTTAAGA
CTAAATTATTAACAAGATGCAGACTTTAAAAGTTACCACTGACCACATAT
AGTCACACAAAGGAAACTTTGTGTGTGAAAATACAGAACGAAACTCTTCC
ACATCATTACAAGGCTGCTCTAATCGGAAGAGATTCTATGTTTCTTACCC
CCACTCACATAATGACAGCAATTGGAGTTGGAAGAATTTACTTGCATCAN
ATCTGAGTATCACAAATGCAATTCTGAAAGGGTAAGCAAATCATGTGAAC
ATTACTTCAGGGAAATAGCCAAATGACAGTTGGGTAAGATAATAAAAATC
CCTTGGGCACAGCAAAAAGAAAATCACCTCCTTCCCCCCCGAAATGATGC
AATTTACAAAAGCTGAACGTTCCCATGGAACTCCCTTTTCTGAATCACTG
GCCNTGGATTTAAATGGACCTTAAAAATCCGGACTGGAGCCACCCAATCC
CCTTGGTCTGACCCCACCTGAAGCCCCCCCACAATAAAGGATAAAAAATT
CTCCCCCCCCCCTATT

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTTGTCTTGGGACAACCTGTTCTTGGG
GTACAGGATTTGGCATTTAAATAAATAGCAGCATCAGACCAATCCCCAAC
AACTAGCAATATAATTATTTATTGTTATCAGTCTAGGTAGATAGGCACAT
TGCAAATGAGAAAGCAGGGAATCTGAAAGACTGGGATGGATGGATGGATG
GATGGATGGATGGATGNATGNNNCCNNCNNCNNNCCCCCCCCCCCCCCCC
CCCCNNNCCCCCCCCNCTCTTTTCCCCCNCCNCCCCCCNCCCCCCCCCCC
CCCCNNNNNCCCCCNCCCCCCCNCCCCCNCCCNNCCNCCNCCCCNNNCCC
CNCNCCCCCCCCCCCCCCCCCCCNNNNNCCCCCCNNNNNNCCNNCCCCCC
CCCCCCCCCCCCCCCNNCCCCCNCCCCCCCCNNNCCCCCCCCCCCCCCCC
CCCCCCCCCCNNCCCCCCCCCCCCCCCCCCCCCNNCCNCCCCCCCNCNNC
NCCCNNNCCCCCCCCCCCCCCCCCCCCCCNNNCCCCCCCCCCCCNCCCCC
NNNCCNNNNNCCCNCCCCCCCCCCCCNNNCCCCCCCCCCCNCNNCCCCCC
CCCCCCCCNCCCCCNCCCCCNNCCCCCCCTCCCNCCCCCTCTCCCCCCCC
CNCNNCNNNNCNCNCTNCNNNCCTCCTTCCCCCCCCCCCCCCCCCCCCTT
CCTTTTCCCCCCCTCCCTTCCTCTTTTCCCCTTTCCCCCCCCCCTCCNCC
CCTCTCCCTCCCCCCTCCTTCCTTTTCTTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_a23.b1 MSMg01no391_a23.b1 CHROMAT_FILE:
MSMg01no391_a23.b1 PHD_FILE: MSMg01no391_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:09 2005
         (418 letters)



>mm_chr1_68292132_68292949
          Length = 818

 Score =  803 bits (415), Expect = 0.0
 Identities = 417/418 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaatttaaaaactacttttcttttcatttattattgatattttttcttaaggaaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaatttaaaaactacttttcttttcatttattattgatattttttcttaaggaaaata 260

                                                                       
Query: 61  gcagttattaactgactttggaagctcattcctacaatatagggctttaaaagactctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagttattaactgactttggaagctcattcctacaatatagggctttaaaagactctgg 320

                                                                       
Query: 121 aatgtttacttctaaaatggtctataaaatgaccaaatatatatggataaataggtaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgtttacttctaaaatggtctataaaatgaccaaatatatatggataaataggtaatt 380

                                                                       
Query: 181 gaattaaatattgtcaacttttaagactaaattattaacaagatgcagactttaaaagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattaaatattgtcaacttttaagactaaattattaacaagatgcagactttaaaagtt 440

                                                                       
Query: 241 accactgaccacatatagtcacacaaaggaaactttgtgtgtgaaaatacagaacgaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accactgaccacatatagtcacacaaaggaaactttgtgtgtgaaaatacagaacgaaac 500

                                                                       
Query: 301 tcttccacatcattacaaggctgctctaatcggaagagattctatgtttcttacccccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttccacatcattacaaggctgctctaatcggaagagattctatgtttcttacccccac 560

                                                                     
Query: 361 tcacataatgacagcaattggagttggaagaatttacttgcatcanatctgagtatca 418
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 tcacataatgacagcaattggagttggaagaatttacttgcatcaaatctgagtatca 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no391_a23.g1 MSMg01no391_a23.g1 CHROMAT_FILE:
MSMg01no391_a23.g1 PHD_FILE: MSMg01no391_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:09 2005
         (195 letters)



>mm_chr1_68326357_68326951
          Length = 595

 Score =  375 bits (194), Expect = e-109
 Identities = 194/194 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttgtcttgggacaacctgttcttggggtacaggatttggcatttaaataaatagcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acttgtcttgggacaacctgttcttggggtacaggatttggcatttaaataaatagcagc 302

                                                                       
Query: 61  atcagaccaatccccaacaactagcaatataattatttattgttatcagtctaggtagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atcagaccaatccccaacaactagcaatataattatttattgttatcagtctaggtagat 242

                                                                       
Query: 121 aggcacattgcaaatgagaaagcagggaatctgaaagactgggatggatggatggatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aggcacattgcaaatgagaaagcagggaatctgaaagactgggatggatggatggatgga 182

                         
Query: 181 tggatggatggatg 194
           ||||||||||||||
Sbjct: 181 tggatggatggatg 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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