BAC Information

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BAC

Clone NameMSMg01-391C21
Chromosome1 (Build37)
Map Location 111,986,934 - 111,987,348
singlet/doubletsinglet
Overlap geneCdh7
Upstream geneEG666508
Downstream geneLOC100041429, EG626652, Cdh19
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391C21.T7 (MSMg01no391_c21.b1)MSMg01-391C21.TJ (MSMg01no391_c21.g1)
ACCAG493015AG493016
length767812
length of high quality
(start - end)
476 (44 - 519)415 (76 - 490)
definitionCHROMAT_FILE: MSMg01no391_c21.b1 PHD_FILE: MSMg01no391_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:18 2005CHROMAT_FILE: MSMg01no391_c21.g1 PHD_FILE: MSMg01no391_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTAACTTGA
ATTGATGGATAATGGTTTTGATGTGCTCCTGGATTTGGTTTGCAGGAATT
TTATTGAGTATTTTTTCATCGATATTCATAAGGGAAATTAGTCCAAAGTT
CTCTTTCTTATTTGGGTCATTGTGTGGTTTAGGTATGAGTGCATGTGTGG
CTTCACGGACCGAATTGGGTAGTGTTTCTTCTGTTTCTATTTTGTGGAAT
ATTTTGAAGAGTATTGGTATAAGGTCATCTTTGAAAGTCTGATATAACTC
TGCACTAAACCCTTCTGGACCTGGACATTTTGTGGTTGAGAGGCTATTAA
TGACTGTTTCTATCTCTTTAGGTATTATGTAACTGCTTAGCTCAATTATC
TGACCCTGATTTAACTTTGGTACCTGCCATCTGTCTAGAAAATTGTCCAT
TTCATCCAGATTTTCCAATTTTGTTGAGTATATAGGCTTTTATAGTAGGA
TCTGAAGAGTTTTGGATTTTCTCAGNTTCTCTTATCTCTCATTTCATTTC
TGAGTTTGCTAAACTGGAGATTCCTTTTTTTGGCCCCCAGCTANGTGGGT
AAAGGGTTATCTACCTTCCTGAGGTTCTCCAGAAACCACCTTGGGTTGGA
TGAAACTTTGGACATTTCCCTTGTTTAAACTGGGTGATTCCCCCCCGAAA
TTAATATTTCCTCCCCACCACTCCTCTGGGAGGGATTAATCCCCCTTGTG
CCAACACTCCAAAAAAA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATCTAAAGCTTTGTCACAGCAACAGA
GAACCAAACTTGGCATTTGTAAAATCAGTGGTGCAGGGACTGAGGAAGGC
ACCTGATAGATTAATTTGAGGCAGAATGGGAAGTGGGAGGAGAGTTGCTA
TCACAACCAGGAGTCACCAATCAATACAGTTTCTGATCCCAGTAATATTC
AAACTCAAAATAGTTCTTCTAGCTTCTCTCAAATAAATACTTGACTTCCC
ATTAGTACTTGTTTGAGTGACTTTTCTTAGACAACTTATATAATTGTAGA
ATGACACTTAAGCTGCCCTGTCATTTTTCAGATAGGCATCTATCAATGTA
TTTAAATATCTAAGCTCATTCTTATTTCTGAGATTTTACATAATAGCCTT
TACTATTCATATTCACTGCATCACAGAGAAGATCCATCAGCTATTTCCCC
TCTAACAAAATCAACAAAACATATCATCTTTCCTACTACTCATTTCAGAA
TAGATTGAATATTTAACACCTACGTTATTATTTCCCCCAACCTTTTTAAT
AAAGATTATATCCCGCGTAGTGACCCGCGCCTATTTGGTCATTCTCGATC
CCCATTTATCTAAGGCCTCCTTAACTTCCCCCTACGCTTTTATTCCCCGA
AAGCCCTGGGTGGCTTCACAAACTGCCCCCATTCTATTCCACTCCTCCGC
GATTATTTCCGGGGCTCGGCCCGCCTGGGCCCCTTGCGTCTTCCTCATCC
CCTCTCATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_c21.g1 MSMg01no391_c21.g1 CHROMAT_FILE:
MSMg01no391_c21.g1 PHD_FILE: MSMg01no391_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:18 2005
         (415 letters)



>mm_chr1_111986734_111987548
          Length = 815

 Score =  779 bits (403), Expect = 0.0
 Identities = 412/415 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaaagctttgtcacagcaacagagaaccaaacttggcatttgtaaaatcagtggtgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tctaaagctttgtcacagcaacagagaaccaaacttggcatttgtaaaatcagtggtgca 556

                                                                       
Query: 61  gggactgaggaaggcacctgatagattaatttgaggcagaatgggaagtgggaggagagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gggactgaggaaggcacctgatagattaatttgaggcagaatgggaagtgggaggagagt 496

                                                                       
Query: 121 tgctatcacaaccaggagtcaccaatcaatacagtttctgatcccagtaatattcaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgctatcacaaccaggagtcaccaatcaatacagtttctgatcccagtaatattcaaact 436

                                                                       
Query: 181 caaaatagttcttctagcttctctcaaataaatacttgacttcccattagtacttgtttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 435 caaaatagttcttctagcttctctcaaataaatacttgacttcccattagtgcttgtttg 376

                                                                       
Query: 241 agtgacttttcttagacaacttatataattgtagaatgacacttaagctgccctgtcatt 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agtgacttttcagagacaacttatataattgtagaatgacacttaagctgccctgtcatt 316

                                                                       
Query: 301 tttcagataggcatctatcaatgtatttaaatatctaagctcattcttatttctgagatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tttcagataggcatctatcaatgtatttaaatatctaagctcattcttatttctgagatt 256

                                                                  
Query: 361 ttacataatagcctttactattcatattcactgcatcacagagaagatccatcag 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttacataatagcctttactattcatattcactgcatcacagagaagatccatcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)