BAC Information

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BAC

Clone NameMSMg01-391G15
Chromosome1 (Build37)
Map Location 65,611,809 - 65,789,101
singlet/doubletdoublet
Overlap genenone
Upstream geneCreb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391G15.T7 (MSMg01no391_g15.b1)MSMg01-391G15.TJ (MSMg01no391_g15.g1)
ACCAG493192AG493193
length767757
length of high quality
(start - end)
477 (56 - 532)518 (76 - 593)
definitionCHROMAT_FILE: MSMg01no391_g15.b1 PHD_FILE: MSMg01no391_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:37 2005CHROMAT_FILE: MSMg01no391_g15.g1 PHD_FILE: MSMg01no391_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,611,809 - 65,612,285)(65,788,720 - 65,789,101)
sequence
GGGCCGCTATACGACTCCTATATCCAGAGGATCCGCGGAATTCCAAGTCT
ACGGGTGGTGGGCTATCATTAGATGTTTTCTGGTCCATTAAATAATCACT
GTGACTTCAGGGGTGCATCAGGGAGGCAAGTAATGGCAGGAAGGTAGTAA
GTACAGCTTAATCGACTATTCATTGTGATGGATGAATGGCTCCTCTGAGC
TGCACACACTAAGACACAGCTGAATCAATCAGTAGCAAAAGGAGAGCAGA
AGGCAGCTATTCTCATAGCTAGGGCATGAGAGTAAGAGACTAATGGAGAC
TGTATTGTTTTAAAACAAATTAAAGAAAAATTAGATAATTTGGAACACCC
TGCAGATCTTCCTAAATTTATGTCTGTCTTCTTTCTTCCAAGTAGATTCA
AGATATAAATGAAAGTTTGAGTGTAGAGACATTTGACACTCTCTGAGAGT
GGTACCATGAATACCCATAATGCTTTTGTTTCTTTCAAAATTTTCTCTAC
TCCTATAGATAAGCATCTATATATGAATTATAGAAAGCATAAGTTTTATG
TTTTCTATGCTATATGGCAGGCAAAAGGATCTTTCCCAAGAGTACACAAG
AAGAGACCCATGGTTCCCGCTTGCTTATGTAGCACAGGATGGCCCTGTCA
CACCCCATTGGGAGGAGAGAACTTGGGCCCTGGGAAGGTCCCATGCCCCC
CGGAAGGGAATGCCCCCCCCTGGAAAACTGAAAAGGAAATTGCCTGCCCC
CTCGCCCCCCCTTCCCN
NCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCTAATGGCAG
AGAAGCACCTGAAAAAATGTTCAGCATCGTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGTTGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTTTTGGTGGGATTGCAAGCTTGTACAACCACTCAGGAAA
TCAGTCTGGCAGTTCCTCATTATATTGGGTGTGTAGGGGAGCTGTATGGG
GGACTTTTGAGATAGCATTGGAAATGTAAATGAGGAAAATACCTAATAAA
AATATAAAAAACCCTGTTTATAATAATAATGATAATAATTTAGAGATAAA
GTACAGAGAAATGAAATAACAATTCAGGATAATGCAAACCATGGTTTGCA
TCATTGTTGCTAATCTACATACATTTTCTTACTCTATTTGAAGGGCTCCT
TTGGTTCAAATTGCTATGTTGGTCATACCATTCACATAAACTCATTCTAC
TGCCCCTCCGGAACACAGCTCAGATCACATAGACCCGAACGGAACACTAG
CTTGTTTCAGTGTTAAAATCAGAACCCCGGCCCGAACGGAATTTGTTAGT
AATTTACTTTTCCTAAACCAAACGGCCACCATCGACCCTGGTTTCTCCGA
AAAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_g15.b1 MSMg01no391_g15.b1 CHROMAT_FILE:
MSMg01no391_g15.b1 PHD_FILE: MSMg01no391_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:37 2005
         (477 letters)



>mm_chr1_65611609_65612485
          Length = 877

 Score =  899 bits (465), Expect = 0.0
 Identities = 474/477 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtgggctatcattagatgttttctggtccattaaataatcactgtgacttcaggggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtgggctatcattagatgttttctggtccattaaataatcactgtgacttcaggggtg 260

                                                                       
Query: 61  catcagggaggcaagtaatggcaggaaggtagtaagtacagcttaatcgactattcattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcagggaggcaagtaatggcaggaaggtagtaagtacagcttaatcgactattcattg 320

                                                                       
Query: 121 tgatggatgaatggctcctctgagctgcacacactaagacacagctgaatcaatcagtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatggatgaatggctcctctgagctgcacacactaagacacagctgaatcaatcagtag 380

                                                                       
Query: 181 caaaaggagagcagaaggcagctattctcatagctagggcatgagagtaagagactaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaaggagagcagaaggcagctattctcatagctagggcatgagagtaagagactaatg 440

                                                                       
Query: 241 gagactgtattgttttaaaacaaattaaagaaaaattagataatttggaacaccctgcag 300
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagactgtattggcataaaacaaattaaagaaaaattagataatttggaacaccctgcag 500

                                                                       
Query: 301 atcttcctaaatttatgtctgtcttctttcttccaagtagattcaagatataaatgaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcttcctaaatttatgtctgtcttctttcttccaagtagattcaagatataaatgaaag 560

                                                                       
Query: 361 tttgagtgtagagacatttgacactctctgagagtggtaccatgaatacccataatgctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgagtgtagagacatttgacactctctgagagtggtaccatgaatacccataatgctt 620

                                                                    
Query: 421 ttgtttctttcaaaattttctctactcctatagataagcatctatatatgaattata 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgtttctttcaaaattttctctactcctatagataagcatctatatatgaattata 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no391_g15.g1 MSMg01no391_g15.g1 CHROMAT_FILE:
MSMg01no391_g15.g1 PHD_FILE: MSMg01no391_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:37 2005
         (518 letters)



>mm_chr1_65788184_65789101
          Length = 918

 Score =  716 bits (370), Expect = 0.0
 Identities = 379/382 (99%)
 Strand = Plus / Minus

                                                                       
Query: 137 gtgacagcagttgctggcgaggatgtggagaaagaggaacactcctccatttttggtggg 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 gtgacagcagttgctggcgaggatgtggagaaagaggaacactcctccatttttggtggg 859

                                                                       
Query: 197 attgcaagcttgtacaaccactcaggaaatcagtctggcagttcctcattatattgggtg 256
           ||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||
Sbjct: 858 attgcaagcttgtacaaccactcaggaaatcagtctggcagttcctcagaaaattgggtg 799

                                                                       
Query: 257 tgtaggggagctgtatgggggacttttgagatagcattggaaatgtaaatgaggaaaata 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tgtaggggagctgtatgggggacttttgagatagcattggaaatgtaaatgaggaaaata 739

                                                                       
Query: 317 cctaataaaaatataaaaaaccctgtttataataataatgataataatttagagataaag 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cctaataaaaatataaaaaaccctgtttataataataatgataataatttagagataaag 679

                                                                       
Query: 377 tacagagaaatgaaataacaattcaggataatgcaaaccatggtttgcatcattgttgct 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tacagagaaatgaaataacaattcaggataatgcaaaccatggtttgcatcattgttgct 619

                                                                       
Query: 437 aatctacatacattttcttactctatttgaagggctcctttggttcaaattgctatgttg 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aatctacatacattttcttactctatttgaagggctcctttggttcaaattgctatgttg 559

                                 
Query: 497 gtcataccattcacataaactc 518
           ||||||||||||||||||||||
Sbjct: 558 gtcataccattcacataaactc 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)