BAC Information

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BAC

Clone NameMSMg01-391J04
Chromosome1 (Build37)
Map Location 82,390,121 - 82,390,362
singlet/doubletsinglet
Overlap geneRhbdd1
Upstream geneEG621020, LOC433328, EG665145, Irs1
Downstream geneCol4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391J04.T7 (MSMg01no391_j04.b1)MSMg01-391J04.TJ (MSMg01no391_j04.g1)
ACCAG493313AG493314
length744774
length of high quality
(start - end)
591 (35 - 625)244 (81 - 324)
definitionCHROMAT_FILE: MSMg01no391_j04.b1 PHD_FILE: MSMg01no391_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:50 2005CHROMAT_FILE: MSMg01no391_j04.g1 PHD_FILE: MSMg01no391_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACCT
GAGTTCCACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTT
AATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACAC
CAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGA
GGATGTGGAGAAAGAGGAACACTCCTTTATTGTTGATGAGATTGCAAGCT
TGTAAAACCACTCTGGAAATCAGTACGTCGGTTCCTCAGAAAATTGGACA
TAGTACTACTGGAGGATTCCACAATATATCTCCTGACCATATTCCAGAAG
ATGTTCCAACCAGTAAGAAGGACACATGCTCCACTATATTCATAGCAGCC
TTATTTATAATAGCCAGAAGCTGGAAAGAACACAGATGCCCCACAACAGA
AGAGTGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAG
CTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTG
GGGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCTAATGA
TATGTACTCACTGATAAGTGGATATTAGCCCTGAAACTTAGAATACCCAA
GATACCAGATACAATTTGCAAAATGCATGCAACTCACGAAGAATGANGAC
CCAAGTGTGGACCCTTTGCTCCCTCTTTGAATTGGAACCAAACC
CCCCCCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAATCCAGACCAGCTTGGGAAGA
CTGTAAAACCTTGTCTCCAAAGAACAAAGAGAAACAAGGAACCATATAAA
ATAAGCAAGGACAGTGGTATGAAGAGATCTGGCGAGGATGTCCTGGGCTC
TGCTCAGTCTCCTTCATCATGCTACCTGGCCACAAACACCATGTAGAAAC
TACTGATAAATGGATACAGCACAATTTCCTGAATTTATGAGATTGTGGAG
ATGAAAAAAAATATTTAATATTTTGGTAATGTACGGCTTTACTTCAATAA
CATTTTCTTTATAATTATACCCATCATTGGCAGAAGTTTACCATTGGACA
CTAGCCAAACAAGAAAGCTCCCCCCACCATTGCCACTGTATCTTGTTCCT
GACGAGTATAGGTAACTTGACACTTCGCCCCCTATCATACCTCCTCGCAG
TCTTTCCATTTCTTCATTATCCATACTCTGCCCCCACGCGCTTCTCCCCC
CCATACCCTCCCTGACTTCTCCTTCTCTTTTCCTCCCAACCTCTTTTTAC
TATTTTTCTCCCCTTTCCCCCCTCCCCTCCTGTGCTCCCCCCCCCTTCTC
TCCCCCCTTTCCCTTTCCCCTCTTTTTTCCCCCCCCTTTTCCCTTTCCCT
TCCTTCTTTTTCTCTCCCTCCCCCCATTCCCTCTTTCTTCCCTTTCCCTC
TCTCTCCCCCCCTTCCTTCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_j04.g1 MSMg01no391_j04.g1 CHROMAT_FILE:
MSMg01no391_j04.g1 PHD_FILE: MSMg01no391_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:50 2005
         (244 letters)



>mm_chr1_82389940_82390583
          Length = 644

 Score =  429 bits (222), Expect = e-125
 Identities = 238/244 (97%), Gaps = 2/244 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccagaccagcttgggaagactgtaaaaccttgtctccaaagaacaaagagaaacaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 423 tccagaccagcttgggaagactgtaaaaccttgtctccaaagaacaaagagaaacaaaga 364

                                                                       
Query: 61  accatataaaataagcaaggacagtggtatgaagagatctggcgaggatgtcctgggctc 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 363 accatataaaataagcaaggacagtggtatggagagatctggcgaggatgtcctgggctc 304

                                                                       
Query: 121 tgctcagtctccttcatcatgctacctggccacaaacaccatgtagaaactactgataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 303 tgctcagtctccttcatcatgctacctggccacaaacaccatgtagaaactacagataaa 244

                                                                       
Query: 181 tggatacagcacaatttcctgaatttatgagattgtggagatgaaaaaaaatatttaata 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 243 tggatacagtacaatttcctgaatttatgagattgtggagatgaaaaaaa--atttaata 186

               
Query: 241 tttt 244
           ||||
Sbjct: 185 tttt 182


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)