Query= MSMg01no392_a16.b1 MSMg01no392_a16.b1 CHROMAT_FILE:
MSMg01no392_a16.b1 PHD_FILE: MSMg01no392_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:26 2005
(537 letters)
>mm_chr1_131115724_131116660
Length = 937
Score = 909 bits (470), Expect = 0.0
Identities = 517/537 (96%), Gaps = 8/537 (1%)
Strand = Plus / Plus
Query: 1 caaagccaggtatgctgttgtgcccttgtaattggagcactgaggaggcagagaaggtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 caaagccaggtatgctgttgtgcccttgtaattggagcactgaggaggcagggaaggtaa 260
Query: 61 gtggtgaacatgcaaacttacacacagaaatatgcataatgaatgctatttctgtcattc 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 atggtgaacatgcaaacttacacacagaaatatgcataacgaatgctatttctgtcattc 320
Query: 121 tttaaaaatgcctggctttctattttataaaggtatatttcatcttatttttaaaagtag 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 tttaaaaatgcctggctttctattttataaaggtatattttatcttatttttaaaagtag 380
Query: 181 gaaggctgaaatttgattgtatgtggtggttaatcttgtgaacctggtagaatttagaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaggctgaaatttgattgtatgtggtggttaatcttgtgaacctggtagaatttagaat 440
Query: 241 catttataagactaaaatctggatacacctgtgagggactcattggatggtgtgaagacc 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catttagaagactaaaatctggatacacctgtgagggactcattggatggtgtgaagacc 500
Query: 301 caccttgaatgtggacagcactatcaaatggcggggcttctggactgaataaaaaggaga 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 caccttgaatgtggacagcactatcaaatggtggggcttctggactgaataaaaaggaga 560
Query: 361 cagtgagctgagcaccagcatccatctctctctgcttcttgactgtggatgccatgtgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtgagctgagcaccagcatccatctctctctgcttcttgactgtggatgccatgtgac 620
Query: 421 cagctgcctcatgatcctgcaaccaagacatctgtatcacattggactataccctcaagc 480
||| || ||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 tagccgcttcatgttcctgcaaccaagacatctgtatcacattggact-------caagc 673
Query: 481 tggatcaaaatatacttttccttctcccttgaggngttttttgttgactattatgtc 537
|||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||
Sbjct: 674 tggatcaaaatatacttt-ccttctcccttaaggtgttttttgttgactattatgtc 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no392_a16.g1 MSMg01no392_a16.g1 CHROMAT_FILE:
MSMg01no392_a16.g1 PHD_FILE: MSMg01no392_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:27 2005
(160 letters)
>mm_chr1_131272748_131273307
Length = 560
Score = 310 bits (160), Expect = 4e-89
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 1 ctttgatgtgtaaaagaaatcaattcagtgtcattataaaaagcccaggaccatccctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ctttgatgtgtaaaagaaatcaattcagtgtcattataaaaagcccaggaccatccctct 301
Query: 61 ctctaaacccttttcatttctatgatggacattatgaacgagcaagattagtgtaaacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ctctaaacccttttcatttctatgatggacattatgaacgagcaagattagtgtaaacag 241
Query: 121 gtgacatctaccagaggtgtccagctttatggcatctctg 160
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gtgacatctaccagaggtgtccagctttatggcatctctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 560
Length adjustment: 8
Effective length of query: 152
Effective length of database: 552
Effective search space: 83904
Effective search space used: 83904
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
