Query= MSMg01no392_d19.b1 MSMg01no392_d19.b1 CHROMAT_FILE:
MSMg01no392_d19.b1 PHD_FILE: MSMg01no392_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:42 2005
(505 letters)
>mm_chr1_88835269_88836175
Length = 907
Score = 820 bits (424), Expect = 0.0
Identities = 485/508 (95%), Gaps = 8/508 (1%)
Strand = Plus / Minus
Query: 1 ccaagacatgacacatgagttaaaaaatggagatgaaacaagggaagactatataaattc 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 862 ccaagacatgacacatgagttaaaaaatggaaatgaaacaagggaagactatataaattc 803
Query: 61 caaagagacatttagtttatgataaaagtaaagtaaaggagccttatagatcaggatata 120
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 802 caaagagacatttagtttaggata-----aaagtaaaggagccttatagatcaggatata 748
Query: 121 aacctacaagcaaccatgaacttatagataaaggcagaaaaatgaagaaggcaagt-aaa 179
| |||||||||||||||||| |||||||||||| |||||||||||||||| ||||| |||
Sbjct: 747 agcctacaagcaaccatgaaattatagataaagacagaaaaatgaagaagtcaagtaaaa 688
Query: 180 aaaaaaccaaaaaaacaaaaacaacagcaaaaagaagagcaatactgtaagactgcctag 239
|||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 687 aaaaaaacaaaaaaacaaaaacagcagcaaaaagaagagcaatactataagactgcctag 628
Query: 240 tgaggtcagtaacactgaacagttttaaagttcttaatacttgagatgtacatatgccca 299
||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 627 tgaggtcagcaacactgaacagttttaaagttcataatacttgagatgtacacatgccca 568
Query: 300 aggaatactgccctgggaaacgag-aaaaaaagggagtaaatcacaagtaattgtattta 358
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 567 aggaatactgccctgggaaacgagaaaaaaaagggagtaaatcagaagtaattgtattta 508
Query: 359 ttgttgttagaaacaggctaatgtgatcaagtagaaataattcattctgccaggag-aaa 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 507 ttgttgttagaaacaggctaatgtgatcaagtagaaataattcattctgccaggagaaaa 448
Query: 418 aaatatctgcagaattttagcttgcttgtgtatgtgggtatgtgcgtatgtacgtgtgca 477
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 447 aaatatctgcagaattttagcttgcttgtgtatgtgggtatgtgcgtatgtatgtgtgca 388
Query: 478 tgtgtgagtgtgtgtaagtgtgtgtacc 505
||||||| ||||||||||||||||||||
Sbjct: 387 tgtgtgaatgtgtgtaagtgtgtgtacc 360
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 907
Length adjustment: 10
Effective length of query: 495
Effective length of database: 897
Effective search space: 444015
Effective search space used: 444015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no392_d19.g1 MSMg01no392_d19.g1 CHROMAT_FILE:
MSMg01no392_d19.g1 PHD_FILE: MSMg01no392_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:42 2005
(448 letters)
>mm_chr1_88653706_88654553
Length = 848
Score = 851 bits (440), Expect = 0.0
Identities = 446/448 (99%)
Strand = Plus / Plus
Query: 1 ttggcaaaaataaaatacaaagtgaaaattaaaacaaataacttttaagtaaagtaagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggcaaaaataaaatacaaagtgaaaattaaaacaaataacttttaagtaaagtaagat 260
Query: 61 aaatgataatattacaatatcttttttatctttttttagttgagctaaagaaaaggaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgataatattacaatatcttttttatctttttttagttgagctaaagaaaaggaatg 320
Query: 121 gacagcttgttatttttttctgttctggattatattggtctatgaagctctgtaatttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacagcttgttatttttttctgttctggattatattggtctatgaagctctgtaatttgt 380
Query: 181 gtcttgtcatgggaggcatgctttatccagctgtggaatttattcctggtccaaaaggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcttgtcatgggaggcatgctttatccagctgtggaatttattcctggtccaaaaggat 440
Query: 241 ctattatctcatcaatagaggatactctgagcattatgacattcttatattatcttcctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctattatctcatcaatagaggatactctgagcattatgacattcttatattatcttcctt 500
Query: 301 cattctctctttttaaagttagatgtgtccacactccttttatttttctatggatgttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cattctctctttttaaagttagatgtgtccacactccttttatttttctatggatgttta 560
Query: 361 ccatccacttcctgtctccttcctcaccctcaactatgctattctttctaatggataaag 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 ccatccacttcctgtctccttcctcaccctcaactatgctattctttctaatggataagg 620
Query: 421 tgagtcttccagcgtccaagtgaagagt 448
|||||||||||| |||||||||||||||
Sbjct: 621 tgagtcttccagtgtccaagtgaagagt 648
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
