Query= MSMg01no392_e21.b1 MSMg01no392_e21.b1 CHROMAT_FILE:
MSMg01no392_e21.b1 PHD_FILE: MSMg01no392_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:47 2005
(367 letters)
>mm_chr1_160122204_160122970
Length = 767
Score = 621 bits (321), Expect = 0.0
Identities = 344/363 (94%), Gaps = 18/363 (4%)
Strand = Plus / Plus
Query: 4 ggaattcatagatgcatattttacccaatagtagttcttttttttgtttttgtttttaat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatagatgcatattttacccaatagtagttcttttttttgtttttgtttttaat 263
Query: 64 cctgttagtactttcaaaatgactgttggacaagaaactaacattagccagacttgaatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctgttagtactttcaaaatgactgttggacaagaaactaacattagccagacttgaatt 323
Query: 124 gcctttattcccactactttccatcagttagatctctttttaattaggactttgtgtaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcctttattcccactactttccatcagttagatctctttttaattaggactttgtgtaag 383
Query: 184 ctggcatacacatacacacacacacacacacacacacacacacacacacacttttttggc 243
|||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 384 ctggcatacacatatacacacacacacacacac------------------ttttttggc 425
Query: 244 agtttgcttactgctacatgacaggctgaatcttcgtgtatcccccaaggaacttgttac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agtttgcttactgctacatgacaggctgaatcttcgtgtatcccccaaggaacttgttac 485
Query: 304 ataatccaaagccaggtttttaactcaggggaatctagttcagttggaaggacagaaatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ataatccaaagccaggtttttaactcaggggaatctagttcagttggaaggacagaaatt 545
Query: 364 gaa 366
|||
Sbjct: 546 gaa 548
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space: 271364
Effective search space used: 271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no392_e21.g1 MSMg01no392_e21.g1 CHROMAT_FILE:
MSMg01no392_e21.g1 PHD_FILE: MSMg01no392_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:47 2005
(313 letters)
>mm_chr1_160294438_160295150
Length = 713
Score = 547 bits (283), Expect = e-160
Identities = 302/313 (96%), Gaps = 8/313 (2%)
Strand = Plus / Minus
Query: 1 caggccaaaatggacagacagacagacagacagacagacagacaccagcaaatcgctggt 60
|||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 caggccaaaatg--------gacagacagacagacagacagacaccagcaaatcgctggt 498
Query: 61 tctgagcatagtttgatgcctgggaagatggtgaacaaccatgcattttctggtcctgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tctgagcatagtttgatgcctgggaagatggtgaacaaccatgcattttctggtcctgaa 438
Query: 121 gtgaaagtgcttgtgcctctgtgtaaatgccttagtgcagcaggttaccatagcaaccct 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtgaaagtgcctgtgcctctgtgtaaatgccttagtgcagcaggttaccatagcaaccct 378
Query: 181 aacagggtgctgcagtgggcagctttgtacaaaggcacagaaaaccaattattgaacatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aacagggtgctgcagtgggcagctttgtacaaaggcacagaaaaccaattattgaacatc 318
Query: 241 taagctttggacatctagctcatatacatgtaccacagtatacaggcctgattttggaaa 300
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 317 taagctttggacatctagctcatatacatctatcacagtatacaggcctgattttggaaa 258
Query: 301 ttttcaaaaagag 313
|||||||||||||
Sbjct: 257 ttttcaaaaagag 245
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
