BAC Information

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BAC

Clone NameMSMg01-392F05
Chromosome1 (Build37)
Map Location 29,021,963 - 29,022,349
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665903, Gm597, LOC435614, EG623924
Downstream geneEG433283, LOC100040665, LOC665944
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392F05.T7 (MSMg01no392_f05.b1)MSMg01-392F05.TJ (MSMg01no392_f05.g1)
ACCAG493886AG493887
length768775
length of high quality
(start - end)
366 (51 - 416)387 (75 - 461)
definitionCHROMAT_FILE: MSMg01no392_f05.b1 PHD_FILE: MSMg01no392_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:49 2005CHROMAT_FILE: MSMg01no392_f05.g1 PHD_FILE: MSMg01no392_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTAGGGATGGATGGAGCCCCTTGTGTCACTTATCTCCATG
AGGAATATTAATGAGTTCACTATTGTGCAATTTTCCTGTGGTAATCATTG
CTGCTGAAAGTTTAGGAGGACATCAAGTTTGTCATGTCTAGAGAATGGCA
TTTCATGTCAAAGATATAAGAAACTCTTCATGGATTCTCCCAAGGCCTGC
AGGGGTTGTTCTATTTATATGTATGTGTACATATGTGTATATGCATGCAT
TTGTATGTGTATACATATGCATATGTATATGTACTTTTGTATATAATTTT
GTATATGTGTATGTATGTGTATATGTGTGTATATGTATGTATGTGCATAC
ATATGTATATGTGTGNACCTACACTACATATACATCATATGTATATATAC
CTAATTGTACTCCACTTTTTTTGCAATATCCCTTATACTAACCCTTGCCA
CTTCATGTGCCTCATGTCAAATACCTCAGCCCCATGCTATAAGCTCCCAC
ACTCCCCCACCAATTATTCGCCCCCCCTCGTCTTTCACATGCCACTTTCC
GCCCCACTACGTAGATTTTACCCCCCCTATCTACCGCCAATATTCACCCC
ATCCCCCCACTTCCCCCTTTATTCTCCCCCGCCCCCCCTTTTACATCCCT
CATCTCTTTTCTATCCGCCCCCCCCCCTCTCTTTTTTCCCTTTTTACCCT
CTTTCCCCCACCCCCCCN
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTGGGTAATTCATGTGAGCTGGGCA
TCACAAGGAGGGATGTAGACATCCAGAATCTTATTGCACTACTCAAATAG
ACATGTTACACAATCAAATGTGACCTTTCCTATGTAAGGAGAAATCTATT
CAAAGTACATGGAGTTTCATAGCCGACATCTAAAATGAGCTTATCAGAAC
AATAGAATAATACGTTTTTCAAGAGATATAGATAAAATCTTTTACAAATT
CAATTGTTTAGATTTTCACTTTCAAGCTTGTATATTAAAAATTTTGAAGC
CATATGTTCAAAGATATTCATGTGTCTGAAAAATAGGTTTATGACATTTT
CCTATAAAACACGTTTCTAAGTCCCAAGATGGAGTAATTAGGGAAATGTT
TCATTATGGAGCTCTGTAAATTGCCACACCTGTGTAGATGAACAAAGAAT
GCAGACTTTCCCAGAATCCAACACCCATTAAAAGGCTTTATATTTACACG
ACCGAAAATACCTTGTAGTAAGGAACATTCCGCCCTTTTTTTTTCCTGCA
TATTTGTAAGAGATTCTGTATACCCCGGACCCTCCCCCCCTTTAAGTGGT
AAAATATCCCCCCCTATTTCTTCGTCATTCTCCCCTGTTAATAAACAACC
CCCCCCGCTCCTAATCCATTCTCCCCCTTCCATTGCCCCCCCTCCCCACC
CCCTTCAATACTTTTTTTTACCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_f05.g1 MSMg01no392_f05.g1 CHROMAT_FILE:
MSMg01no392_f05.g1 PHD_FILE: MSMg01no392_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:49 2005
         (387 letters)



>mm_chr1_29021763_29022549
          Length = 787

 Score =  710 bits (367), Expect = 0.0
 Identities = 382/387 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgggtaattcatgtgagctgggcatcacaaggagggatgtagacatccagaatcttat 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 587 actgggtaattcatgtgagctgggcatcacaaggcgggatgtagacatccagaatcttat 528

                                                                       
Query: 61  tgcactactcaaatagacatgttacacaatcaaatgtgacctttcctatgtaaggagaaa 120
           ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 527 tgcactattcaaatagacatgttacacaatcaaatatgacctttcctatgtaaggagaaa 468

                                                                       
Query: 121 tctattcaaagtacatggagtttcatagccgacatctaaaatgagcttatcagaacaata 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tctattcaaagtacatggagtgtcatagccgacatctaaaatgagcttatcagaacaata 408

                                                                       
Query: 181 gaataatacgtttttcaagagatatagataaaatcttttacaaattcaattgtttagatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gaataatacgtttttcaagagatatagataaaatcttttacaaattcaattgtttagatt 348

                                                                       
Query: 241 ttcactttcaagcttgtatattaaaaattttgaagccatatgttcaaagatattcatgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ttcactttcaagcttgtatattaaaaattttgaagccatatgttcaaagatattcatgtg 288

                                                                       
Query: 301 tctgaaaaataggtttatgacattttcctataaaacacgtttctaagtcccaagatggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 287 tctgaaaaataggtttatgacattttcctataaaacacgtttctaagtcccaagatggac 228

                                      
Query: 361 taattagggaaatgtttcattatggag 387
           |||||||||||||||||||||||||||
Sbjct: 227 taattagggaaatgtttcattatggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)