BAC Information

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BAC

Clone NameMSMg01-392G05
Chromosome1 (Build37)
Map Location 71,911,965 - 71,912,283
singlet/doubletsinglet
Overlap genenone
Upstream geneA830006F12Rik, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667
Downstream geneEG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392G05.T7 (MSMg01no392_g05.b1)MSMg01-392G05.TJ (MSMg01no392_g05.g1)
ACCAG493934AG493935
length772744
length of high quality
(start - end)
363 (79 - 441)439 (76 - 514)
definitionCHROMAT_FILE: MSMg01no392_g05.b1 PHD_FILE: MSMg01no392_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:53 2005CHROMAT_FILE: MSMg01no392_g05.g1 PHD_FILE: MSMg01no392_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCACAGGATC
CGCGGAATTCACCAGTACTCTGGGTTCTCAGATGTGTGGATGCTGCAATG
AGCAAAACAGACAAGGTTCCTAACCTGACAACGTTTATATTTTGATGAGA
AGGGAGGAGAACAAAATCTCTGTTCCTTCAGGTGAAAGGCATCACAAAGA
ACGACATGTATCCACCTGGATACAGGTGAGAATGGGATGAGCCAGGTTGC
TTGTGGGTTAATGGGGCTTTAGCCAATGAAATGGGAGCGGATAGTGATCT
GTGGCCTCTGGAGAGAAACATTGTTTCCTGACTTAACTTTTCTTTCCAGT
GGCAATTGTTTTGAAAAGGGCAGAAGAAAGAAGTCTGTCTGGAAGACTCT
CTCGGTAGAATTTTCATAGTGCTAATTATTTGAAGCTAGGGAGATTTGGA
GATCTGTTCTTAGGGCATTGTAACACTGGTCTGAATGGCAGCAGAGTGCG
GACCAGGAGTGATAGGAACAGGTGCTGAGCTCACCAACAACATGGGCTGT
ACATTCCTCTCTGTATACATGCTTGACAAATGAATTGACTGGAGACAATA
CAGAGCTGATGAAAAAACAGCCCGACAACTCTTGGGACTTCTCTCTCAGA
AGAGATGTTGCCCTAGCCCTTGAAAATTCCCTTGAATTTTCACATCCCAT
TCCCTCCCCCCCCACTTTACTTAAATGCACCCCCCTACTGCACCCCCGGT
CCCGGATCCTCCCCTCCTCACA
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGCAGCTGAGCCACACACATACAGA
CACACTCACACACACCCACACGCAGACACACTCACACACCAACACACACA
CATATACATACATACACACACAGACACATTCACACACACACATACACTCA
TACTCACAAACACATACACACATGCTCACACACACACAGACACACATATA
CACACAGGCACACTCACACACACCAACATACACACATAGTCACATACTCA
TACACACACGGACACACACTTACTCTATCACACACACCAACACATACTCA
CACATATATACACACACCAACATACACAGGCTCACACACATACACACAGG
CTCACACACATACACACATACACGCACACATGTGAGAGATACATTGTAAA
TAATTGATTAAATAATAAAAATGTAAAACCCTAACCTCCTGCTTTTCTTC
TCTTTTGAAATGAGAGCGTCCCCAGCCCATCCTTTTCGACCTTGTCCTTT
CATGTCAGTCAATGATTCCTGCCACCGGGAAATGGGACCCCTGGAGCCCA
ATAATAATCCCCCTCCAGCCCCCCGTGCGATTAAAAACCCGTTCTTGGAC
CATTCCTAATCCTTTGCCCAACTCTGAATTATTTTTATCCCACGGCCCGG
TACCCCCCCCTCCCCCCTCCGTCGTACCCCACGAATATCCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_g05.b1 MSMg01no392_g05.b1 CHROMAT_FILE:
MSMg01no392_g05.b1 PHD_FILE: MSMg01no392_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:53 2005
         (363 letters)



>mm_chr1_71911521_71912283
          Length = 763

 Score =  594 bits (307), Expect = e-174
 Identities = 316/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 45  acctgacaacgtttatattttgatgagaagggaggagaacaaaatctctgttccttcagg 104
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 763 acctgacaacgtttatattttgatgagaagggaggagaacaaaacctctgttccttcagg 704

                                                                       
Query: 105 tgaaaggcatcacaaagaacgacatgtatccacctggatacaggtgagaatgggatgagc 164
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 703 tgaaaggcatcacaaagaacgacatgtatccacctggatacagatgagaatgggatgagc 644

                                                                       
Query: 165 caggttgcttgtgggttaatggggctttagccaatgaaatgggagcggatagtgatctgt 224
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 643 caggttgcttgtgggttaatggggctttagccaatgaaatgggagcgaatagtgatctgt 584

                                                                       
Query: 225 ggcctctggagagaaacattgtttcctgacttaacttttctttccagtggcaattgtttt 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ggcctctggagagaaacattgtttcctgacttaacttttctttccagtggcaattgtttt 524

                                                                       
Query: 285 gaaaagggcagaagaaagaagtctgtctggaagactctctcggtagaattttcatagtgc 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gaaaagggcagaagaaagaagtctgtctggaagactctctcggtagaattttcatagtgc 464

                              
Query: 345 taattatttgaagctaggg 363
           |||||||||||||||||||
Sbjct: 463 taattatttgaagctaggg 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)