BAC Information

Click to search

BAC

Clone NameMSMg01-392L08
Chromosome1 (Build37)
Map Location 132,265,896 - 132,266,424
singlet/doubletsinglet
Overlap genenone
Upstream geneThsd7b, LOC100042745, LOC100042740
Downstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392L08.T7 (MSMg01no392_l08.b1)MSMg01-392L08.TJ (MSMg01no392_l08.g1)
ACCAG494179AG494180
length763900
length of high quality
(start - end)
531 (54 - 584)155 (69 - 223)
definitionCHROMAT_FILE: MSMg01no392_l08.b1 PHD_FILE: MSMg01no392_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:19 2005CHROMAT_FILE: MSMg01no392_l08.g1 PHD_FILE: MSMg01no392_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNACCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTGGACTCACGATTAAATGTAACCATCTCCAGGATTGA
CAAGAAGGGCTGAAAACTGCTTTGAGCGACACTGAACATAATCACTTTTC
TTACACGTACTTATACTATGGACAAAAGTTGAAATAAACTAATTATCTGA
CTAACTTCCCGGGGGCTTATTGTCACAATTTGCATTAGCGCTTGCCTGCC
AAATCCTTAACATTATGTGAGTCAATTTTGAGAAACTCTAGAGCAGATGA
GATGGTTCAGGGGGACCACGCAGCTTTCCATGATCTGATTTTGATCCCCA
GAACCCACTTCTGAAAGTTGCCCTCTGACCTCCACACATGGTCTGTGTGG
AACACACCTGCACTCACATACACACAACGTACAAACACAGTAATCACAGT
AAAATAAAAAGTTAATTCTAATGTGACTGGAACATAGTGGTCAGACTTCA
CACATTTCAAAGGCAAAACTGAAAAAGAGAATGCATATATATTTGAGAAC
ACACACACTTATTTGTATGCTAAATTATGAGACATCCCCAGAAGCAATTG
GTTCCCACCATCTATGCAGATACCCGCCTCCCCCTTCCCAGCAGAGGTGA
GTCTCACAAACTTGGAAGGACCCCGAATGGCAAACCCCGGGGAAACCGGG
GCGTGGGAGCAACCCTCTCCGGAAGGACCTTAATTTTTCCCAACTTGAAC
CTTTTTTACCCCG
TATGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGAATGGG
TGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTG
GTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGAAGGATTTTC
GTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGTCTTGA
TGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGTGACAACTTTATT
GAGGCATTTTGCTTTTTTTTTTATAACAGTAACTGGCCTGAAGTCCTCGA
TGTTCTGTTGGCCCTTTCTGGGGCCTCCGCCACTCTAGCCATTCTTCCCT
CTTCATTTCTTTCCCCACTATCTCCTCCTCCCCTCCCCCCCCTTTTTTTA
TTACCCTTTCTGTTCTATCCTTTCCCCCTCCCCTCCTTTTTTCTTATTCC
CTTCTTTTTCTTCTTTTCCCCCCTTTTCTCCCCCTTACCCTCTCTTTTTG
TTCCTTATTTCCACTCTTCCTCCCATTTTATCCTTTTCTCTTCGTCCCCT
CTTTTATTCTTCCTCCTCCTTCTCCTATTTCTCCTCCTTCTTTACATTCT
TCCCCTCTCTACTTTCTCCCCTCCTCCTCCCTCTTTTTCCCCTCTATTTC
CCTTTTACTCTTTTCATCTTCTTTCCTCTCCCCCCTCCATTTTTTTTTTC
TCCACTCTTCTCTCTCCCCCCCACATTTCTTCCCCTTGTATTTCCCTCTC
CTTCACTTTTCTCCCCTCCCTCCTCTTCTTCTTCCACTTNTTATTTACTC
TCTCCATCCTTCGTTTTTCATACCTCCTTTTCCCTCCCTTTCACCCTTTN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_l08.b1 MSMg01no392_l08.b1 CHROMAT_FILE:
MSMg01no392_l08.b1 PHD_FILE: MSMg01no392_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:19 2005
         (531 letters)



>mm_chr1_132265692_132266624
          Length = 933

 Score =  965 bits (499), Expect = 0.0
 Identities = 521/529 (98%), Gaps = 2/529 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggactcacgattaaatgtaaccatctccaggattgacaagaagggctgaaaac 64
           |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggacagaggattaaatgtaaccatctccaggattgacaagaagggctgaaaac 264

                                                                       
Query: 65  tgctttgagcgacactgaacataatcacttttcttacacgtacttatactatggacaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgctttgagcgacactgaacataatcacttttcttacacgtacttatactatggacaaaa 324

                                                                       
Query: 125 gttgaaataaactaattatctgactaacttcccgggggcttattgtcacaatttgcatta 184
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 gttgaaataaactaattatctgactaacttcccgggggcttattttcacaatttgcatta 384

                                                                       
Query: 185 gcgcttgcctgccaaatccttaacattatgtgagtcaattttgagaaactctagagcaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcgcttgcctgccaaatccttaacattatgtgagtcaattttgagaaactctagagcaga 444

                                                                       
Query: 245 tgagatggttcagggggaccacgcagctttccatgatctgattttgatccccagaaccca 304
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 445 tgagatggttcagggggaccacgcagcaatccatgatctgattttgatccccagaaccca 504

                                                                       
Query: 305 cttctgaaagttgccctctgacctccacacatggtctgtgtggaacacacctgcactcac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttctgaaagttgccctctgacctccacacatggtctgtgtggaacacacctgcactcac 564

                                                                       
Query: 365 atacacacaacgtacaaacacagtaatcacagtaaaataaaaagttaattctaatgtgac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atacacacaacgtacaaacacagtaatcacagtaaaataaaaagttaattctaatgtgac 624

                                                                       
Query: 425 tggaacatagtggtcagacttcacacatttcaaaggcaaaactgaaaaagagaatgcata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggaacatagtggtcagacttcacacatttcaaaggcaaaactgaaaaagagaatgcata 684

                                                            
Query: 485 tatatttgagaacacacacac--ttatttgtatgctaaattatgagaca 531
           |||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 685 tatatttgagaacacacacacacttatttgtatgctaaattatgagaca 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 933
Length adjustment: 10
Effective length of query: 521
Effective length of database: 923
Effective search space:   480883
Effective search space used:   480883
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)