Query= MSMg01no392_m16.b1 MSMg01no392_m16.b1 CHROMAT_FILE:
MSMg01no392_m16.b1 PHD_FILE: MSMg01no392_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:26 2005
(421 letters)
>mm_chr1_50621357_50622177
Length = 821
Score = 710 bits (367), Expect = 0.0
Identities = 394/405 (97%), Gaps = 6/405 (1%)
Strand = Plus / Minus
Query: 20 gtttcaatgcaatcaatataccatgcctctgtccttatactctttccactccttcttcgg 79
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 gtttcaatgtaatcaatataccatgcctctgtccttatactctttccactccttcttcgg 762
Query: 80 taatgatctgtgagacattgtatttgttttattttaagtgtatattactgggtaaaacat 139
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 761 taatgatctgtgagacattgtatttgttttattttaagcgtatattactgggtaaaacat 702
Query: 140 catgaccaaaatcagcttgtggaggaaagggattatttttgctaatagtttcacatcgca 199
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 701 catgaccaaaatcagcttgtggaggaaagggattattttcgctaatagtttcacatcgca 642
Query: 200 atccattactgaatgtgtcaaggcaggaactcaaggcagat---attaatcgctctacct 256
|||||||||||||||||||||||||||||||||||||||| | ||| || ||||||
Sbjct: 641 gtccattactgaatgtgtcaaggcaggaactcaaggcagatacca--aat-gccctacct 585
Query: 257 caattattttcctttgcccttcatattccttacattctgctattccatctcactaaatta 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 caattattttcctttgcccttcatattccttacattctgctattccatctcactaaatta 525
Query: 317 tctttcacaactgcccctatagagccctatattatgtattacaaaattcaaactaattat 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tctttcacaactgcccctatagagccctatattatgtattacaaaattcaaactaattat 465
Query: 377 atagttcaaatatgaataaaataatatttattttatatatgccaa 421
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 atagttcaaatatgaataaaataatatttattttatatatgccaa 420
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space: 334544
Effective search space used: 334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no392_m16.g1 MSMg01no392_m16.g1 CHROMAT_FILE:
MSMg01no392_m16.g1 PHD_FILE: MSMg01no392_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:27 2005
(244 letters)
>mm_chr1_50463704_50464348
Length = 645
Score = 458 bits (237), Expect = e-133
Identities = 243/245 (99%), Gaps = 1/245 (0%)
Strand = Plus / Plus
Query: 1 aagagaaatgtattgtagggctagttacacaaggtggaaatgaaagtaacctagagctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagagaaatgtattgtagggctagttacacaaggtggaaatgaaagtaacctagagctgt 260
Query: 61 gggcagagatgagtaaatctgcaactgtccacccagtcctagtctcaattctgtataatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggcagagatgagtaaatctgcaactgtccacccagtcctagtctcaattctgtataatt 320
Query: 121 aaaaacaggacatttttactaaaaccctgatgatagaataaatagatatttcccagaatg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 aaaaacaggacatttttactaaaaccctgatgatagaataaatagatatttcccagaaag 380
Query: 181 tcagcaatgggttctttgggttcaaggatgatgatggcagcccccccccc-aggaattct 239
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 tcagcaatgggttctttgggttcaaggatgatgatggcagcccccccccccaggaattct 440
Query: 240 cgata 244
|||||
Sbjct: 441 cgata 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 645
Length adjustment: 9
Effective length of query: 235
Effective length of database: 636
Effective search space: 149460
Effective search space used: 149460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
