Query= MSMg01no392_p04.b1 MSMg01no392_p04.b1 CHROMAT_FILE:
MSMg01no392_p04.b1 PHD_FILE: MSMg01no392_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:40 2005
(213 letters)
>mm_chr1_64501873_64502485
Length = 613
Score = 404 bits (209), Expect = e-117
Identities = 212/213 (99%)
Strand = Plus / Plus
Query: 1 gatgtgaacactcaatttcccagtcttgttaaagtagaacagaagcaggacaataattga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatgtgaacactcaatttcccagtcttgttaaagtagaacagaagcaggacaataattga 260
Query: 61 gccgcaaaagctgacactcccctccacaagcccctcccctctttaagtccctcccctcag 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccacaaaagctgacactcccctccacaagcccctcccctctttaagtccctcccctcag 320
Query: 121 tcaaaggcaggctattacaggcactcttaggtttgcttatgggtgtggatatttcctttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaaggcaggctattacaggcactcttaggtttgcttatgggtgtggatatttcctttt 380
Query: 181 tgtttgcagttttcttttcaatttttttttttt 213
|||||||||||||||||||||||||||||||||
Sbjct: 381 tgtttgcagttttcttttcaatttttttttttt 413
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space: 123216
Effective search space used: 123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no392_p04.g1 MSMg01no392_p04.g1 CHROMAT_FILE:
MSMg01no392_p04.g1 PHD_FILE: MSMg01no392_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:40 2005
(492 letters)
>mm_chr1_64621229_64622123
Length = 895
Score = 822 bits (425), Expect = 0.0
Identities = 478/501 (95%), Gaps = 15/501 (2%)
Strand = Plus / Minus
Query: 1 attcactgacatcctgctttacaattttttgagtacctgcatgtaaagtgaaaaggtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 attcactgacatcctgctttacaattttttgagtacctgcatgtaaagtgaaaaggtgtt 518
Query: 61 ttactcccactaataagcaaaatatttttaaaatatcattggtctaataacaagatatat 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 517 ttactcccactaataagcaaaatattttttaaatatcattggtctaataacaagatatat 458
Query: 121 agtataaatttattagacattgttaaacaaaagatgttctacttggtgttgtggtatgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 agtataaatttattagacattgttaaacaaaagatgttctacttggtgttgtggtatgat 398
Query: 181 tcaaaagtaattatccgtggtgaagggatataactctcattaacacaggcaacattagtt 240
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ccaaaagtaattatccatggtgaagggatataactctcattaacacaggcaacattagtt 338
Query: 241 attattaact--aatatttttagaagcaaatattatttttttagtctataaatttttaat 298
|||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 337 attattaa-taaaatatttttagaagcaaatattatttttttaatctataaatttttaat 279
Query: 299 ctggtaatattgaactatgaactgctcagtgaattaatgc----tccccaccta--actc 352
|||||||||||||||||||||||||||||||||||||||| | | || ||||
Sbjct: 278 ctggtaatattgaactatgaactgctcagtgaattaatgctgaat----agttaacactc 223
Query: 353 tccagactcttgaaattttgggaaacaaaacaaaacaaaacaaaacaaaaccctctcgtc 412
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 222 tccagactcttgaaattttgggaaacaaaacaaaacaaaacaaaacaaaatcctctcgtc 163
Query: 413 cactgaggctaaaggacaacttgttctccaatgagcaaggatctgcataatgatg-tatg 471
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 162 caccgaggctaaaggacaacttgttctccaatgagcaaggatctgcataatgatgct-tg 104
Query: 472 ttcttatccaaaatccaaatt 492
|||||||||||||||||||||
Sbjct: 103 ttcttatccaaaatccaaatt 83
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 895
Length adjustment: 10
Effective length of query: 482
Effective length of database: 885
Effective search space: 426570
Effective search space used: 426570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
