BAC Information

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BAC

Clone NameMSMg01-393B07
Chromosome1 (Build37)
Map Location 95,718,491 - 95,719,048
singlet/doubletsinglet
Overlap geneIng5
Upstream geneGpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk
Downstream geneD2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393B07.T7 (MSMg01no393_b07.b1)MSMg01-393B07.TJ (MSMg01no393_b07.g1)
ACCAG494464AG494465
length7701,345
length of high quality
(start - end)		562 (31 - 592)---
definitionCHROMAT_FILE: MSMg01no393_b07.b1 PHD_FILE: MSMg01no393_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:52 2005CHROMAT_FILE: MSMg01no393_b07.g1 PHD_FILE: MSMg01no393_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCCAGGTCTA
GGTCCCCACACCAGAGGACCCAGTACTTTCCTTCACATTGCTGAGGATGA
ATCTAGGGCCTTGCACATGCCAGGCAAGTGTTCTACCACTGAGACACATC
CCAGCCCCTCAATACTACTTTATAAAGCAGCCCCTGGTACTCCCATTCAT
GCACACATCTTCCCTGGGAGTCTGGAAATACAGCACTGGCCGCTGACCTC
CCTAAATACCCAACCAAAACCAAACTCAGGGTCCTAGGTCTATAGGGTCC
CCCTTGGCATCCTTGACTTTGAGTAACTGAACATGACATATGCTCACCTT
TGACATAGCACAGGGATCAACATACCTGTTTTCAAAATGATCTACTTTCA
AATGTTTCTTCCCAAAAATACTTTATTAAACAATATATCCATAATCCATG
ATCCAAAAATACAGATATACATCTTTACATTATTTAATAAAAAGATTTAC
CATAGTATCTCTCCTTTACAAAGGGGACATAGGTAATAATTCCTTGAAAA
TAAAATGTGACATTCATGTTAAAGCTGGATCATCCTGATGGATGGAGTGT
GGCGAAGAGCAACGACCACAGCACATTCTGAGGGAAAAGACACTTCTTAG
ACCTCCCCTCTTTTAAGCTCCTCTGGGCATAGGGAGTGAAGACCAACAAT
CTCTGTGTCTAGAAAACAGAGTTTCAAAGCTGGAAAAAAGGGTCCTCCCC
GGTTGAATTCAAACCCTAAA

ACAATCAAGACACAACATCCGTCGTGTGACTTGCTCATATAATATATATA
TGTTGAACATCTAATCATAAAAACAGTATATTCGTNTGCTATATATACCA
CTATGTATATACACCACTCGACTAGACTACACCATATAAAATATACTATA
TAGCCATATATATATTATAACGACACTACTCTCATCTCCTCATATCCTTC
ATCACTCATACCCTTTCCNCTTACATCATTACGGCCCACTATTACACCAC
AACCCACACACTTCACCTATCATCCATAATCACAGTCCATACCNTCTCAT
CAAACATACACACTCATTTTTCATCCACCTTATTATTATCTCTTATATCT
ACCTTTCTCACCCTCATCACAACTCATATATAACTTACTCATCATCATAA
ATACATCACTAAACAAATATTATCCGACCAAAATCTAAACACCACAACGC
TACAGCAGCTCCATCTCCCTCCCACTTTTATTCTCTTCGCCCATTTATCA
CGCTCCAAATTACCCTTCAATTTAGAATTATTCTCTTATATGTTGCACTC
AACCAATCNTTGCCATCCGACCAGAAAAGCACGACAACAAACAATATTAA
GACACGTATACAGACTAAATACTCACTCTAAAACCATCATATACATCGAC
TTCTACTGTATATCCTAACACACAACGCCTACACCGACTCCCAAATCATT
CACAATATCCCCTCTCTATTTCACTACTCTATATTCAACCACACTCTTTC
GCAATATCAATCAGCAACACAATAATTTTATATTCTCGACTTGACATATC
TTAATTCCCTAACAACCTAGCAAAGGACAAAAATACATACACTAACTTAA
TCCATACTACATTATATTTATTCAACGAAAACCACGACATCCCGAATGTC
TTCGTTCACCTTTCTCACACTCTCCCAGCTTATAAGTCCCTAACTATATA
TTCTACCCGCATATAAGCTCCTCTTCACTTCATCCAACCCTTATATATTA
AACTCCTTACTTACTCACATACAAACTAGATATCCCATCTTCCTTATGCC
ACTCTTTCTTTTGATATATAATACACTTATACCGCATCATCCTAGATAAT
ACTTATCTCTCCACATCCAATCCTTCTCTATTATCCACCACCAATCCCTT
TATCTTATACTTATCATTCACACCTATTATCTCACATAATACCCCATCTA
CCCTATAATGTCTACCCACCGCATACAAATAATATATCATCTCCACTATT
CAACCTTCACTCAACGCCACTTTCGTCTCCTCTCACACCTCCTATATCTT
ACCCATCTCTCTTCTTACCTCTATGCTCTCCTCCATTAACTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_b07.b1 MSMg01no393_b07.b1 CHROMAT_FILE:
MSMg01no393_b07.b1 PHD_FILE: MSMg01no393_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:52 2005
         (562 letters)



>mm_chr1_95718163_95719124
          Length = 962

 Score = 1071 bits (554), Expect = 0.0
 Identities = 557/558 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccccaggtctaggtccccacaccagaggacccagtactttccttcacattgctga 64
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 886 gaattccccaggtctaggtccccacaccaggggacccagtactttccttcacattgctga 827

                                                                       
Query: 65  ggatgaatctagggccttgcacatgccaggcaagtgttctaccactgagacacatcccag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 ggatgaatctagggccttgcacatgccaggcaagtgttctaccactgagacacatcccag 767

                                                                       
Query: 125 cccctcaatactactttataaagcagcccctggtactcccattcatgcacacatcttccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 cccctcaatactactttataaagcagcccctggtactcccattcatgcacacatcttccc 707

                                                                       
Query: 185 tgggagtctggaaatacagcactggccgctgacctccctaaatacccaaccaaaaccaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tgggagtctggaaatacagcactggccgctgacctccctaaatacccaaccaaaaccaaa 647

                                                                       
Query: 245 ctcagggtcctaggtctatagggtcccccttggcatccttgactttgagtaactgaacat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ctcagggtcctaggtctatagggtcccccttggcatccttgactttgagtaactgaacat 587

                                                                       
Query: 305 gacatatgctcacctttgacatagcacagggatcaacatacctgttttcaaaatgatcta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gacatatgctcacctttgacatagcacagggatcaacatacctgttttcaaaatgatcta 527

                                                                       
Query: 365 ctttcaaatgtttcttcccaaaaatactttattaaacaatatatccataatccatgatcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ctttcaaatgtttcttcccaaaaatactttattaaacaatatatccataatccatgatcc 467

                                                                       
Query: 425 aaaaatacagatatacatctttacattatttaataaaaagatttaccatagtatctctcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aaaaatacagatatacatctttacattatttaataaaaagatttaccatagtatctctcc 407

                                                                       
Query: 485 tttacaaaggggacataggtaataattccttgaaaataaaatgtgacattcatgttaaag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tttacaaaggggacataggtaataattccttgaaaataaaatgtgacattcatgttaaag 347

                             
Query: 545 ctggatcatcctgatgga 562
           ||||||||||||||||||
Sbjct: 346 ctggatcatcctgatgga 329


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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