BAC Information

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BAC

Clone NameMSMg01-393C01
Chromosome1 (Build37)
Map Location 75,831,570 - 75,987,702
singlet/doubletdoublet
Overlap genenone
Upstream geneWnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393C01.T7 (MSMg01no393_c01.b1)MSMg01-393C01.TJ (MSMg01no393_c01.g1)
ACCAG494500AG494501
length766771
length of high quality
(start - end)		494 (57 - 550)550 (62 - 611)
definitionCHROMAT_FILE: MSMg01no393_c01.b1 PHD_FILE: MSMg01no393_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:55 2005CHROMAT_FILE: MSMg01no393_c01.g1 PHD_FILE: MSMg01no393_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,831,570 - 75,832,063)(75,987,251 - 75,987,702)
sequence
GCCGCTATACGACTCCTATAGGTTCAGGATCCGCGGAATTCTTGGGGAAC
ATACCGAAGTTTATTAGGGAATGCCACATTTTGAACTGGACACTGTAAGT
TGTTTATATTCCCAAAGCAAAAATGGTAGATCAGCAACGATCCCTATAAA
GAGGAGGATGCATGGGACCCAAGGAGAAGGGACACGATACCTGGAAGCCA
CATGATGTTCAGCAGTTTTAACTGAGAGCCACCTATCATCAATCTTCTCT
TGTTACTGCTTCTTGGACCCAGTGCCAAGTGAGGCGGGTGGTGTTAGATG
CCACCATAAGCCCTCTCTGCACACTCAGTGTGTGGAGACACTGACCATAG
AGGATCGCTCAGGTGAAGGGGGTCTCTATTCAGACCACCAAGTAGGAAAC
CTGGCAAAGTGAGCAGCACTGTTAGGCACCTGGCCATGACAGGGCTATGC
TGTTGTGTGAGAGAGATTACAACAGAGAGAAGTCTGGCTTGATCCTAGGC
TAGGTGAAGGTGTGTGTTTATAGGTGATGGTAGTGGTAGTGAGAAAAAAG
CGTATGATAGTCCAGCCTAACAGGGACAGAGAGCCAAGGATATGTGTTTG
CACTATTACATGCATAGCATTCGGTGACAATATAGTTTGAGGTCCCGATT
ATTTTATTTTTGTCCATCACCTTACACACCGACCCATATTTGAAAAAATC
GGGCCTTTTCTTTCCGCTGAATTAATGCCCCCAATTGCAACCACCTCTCG
TTCCCATCTTGTGCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTAGTAACCAGGAAAGGAAGGCAGGTCATCTGACCTGA
TCACAACTCTGGGATGTTGACTGCTAGACCTTGACAGCTAAATTGGTCAT
AAGGTCCAATACTGCACCCACTGGTGTGTTTCAAAATGCAATATTAGACT
GGCAGTCCTGCTTTGCTTAGAGGATGCATAAGGCCTTTGCATTAAAACCT
TTCTTATAGCCTTCTGTCGTGGTGTACACCATCAGTAAGGTAGAAGGAGC
ATGGCGATCACAATTTCAAGGCCAACCCAAGCTATAGAGTAAGCTCCTAT
CTCCAAAAACAATATGCTTTGTACCATATGTGTTTGTTCAGGTGGATAAC
TGTTAAATTTCATATCCATGAACAATATTCCATAACCCCCATATACCAGC
CATTTGCTCACAATTCTGTTTAAATTTCTTTCTAATTAAGCTGTAGACAT
AAATTCAACCTTCAACTTGTTATTTTAATAATAATTGTAACAATTAACCC
ATAAGTGTTTTATCACTAACAATTATTAAATAATAACTTGTATGCTCATT
AACATAATAAGTCTTGCTAATTGCATGCTGTCTCACAAAGAGATTAACCT
ATGATCAGACCGAAAGCATAGGATAAAACAGAATCAAAGAATTACCTTTG
GAGCCCGTTTGGCAATTGGTTCAAAAAGTTTGTCTTCTCCCAAGTAGGGG
AAAGAACTTGGTGAAATTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_c01.b1 MSMg01no393_c01.b1 CHROMAT_FILE:
MSMg01no393_c01.b1 PHD_FILE: MSMg01no393_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:55 2005
         (494 letters)



>mm_chr1_75831370_75832263
          Length = 894

 Score =  955 bits (494), Expect = 0.0
 Identities = 494/494 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtttattagggaatgccacattttgaactggacactgtaagttgtttatattcccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtttattagggaatgccacattttgaactggacactgtaagttgtttatattcccaaa 260

                                                                       
Query: 61  gcaaaaatggtagatcagcaacgatccctataaagaggaggatgcatgggacccaaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaaaaatggtagatcagcaacgatccctataaagaggaggatgcatgggacccaaggag 320

                                                                       
Query: 121 aagggacacgatacctggaagccacatgatgttcagcagttttaactgagagccacctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagggacacgatacctggaagccacatgatgttcagcagttttaactgagagccacctat 380

                                                                       
Query: 181 catcaatcttctcttgttactgcttcttggacccagtgccaagtgaggcgggtggtgtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcaatcttctcttgttactgcttcttggacccagtgccaagtgaggcgggtggtgtta 440

                                                                       
Query: 241 gatgccaccataagccctctctgcacactcagtgtgtggagacactgaccatagaggatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgccaccataagccctctctgcacactcagtgtgtggagacactgaccatagaggatc 500

                                                                       
Query: 301 gctcaggtgaagggggtctctattcagaccaccaagtaggaaacctggcaaagtgagcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctcaggtgaagggggtctctattcagaccaccaagtaggaaacctggcaaagtgagcag 560

                                                                       
Query: 361 cactgttaggcacctggccatgacagggctatgctgttgtgtgagagagattacaacaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cactgttaggcacctggccatgacagggctatgctgttgtgtgagagagattacaacaga 620

                                                                       
Query: 421 gagaagtctggcttgatcctaggctaggtgaaggtgtgtgtttataggtgatggtagtgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagaagtctggcttgatcctaggctaggtgaaggtgtgtgtttataggtgatggtagtgg 680

                         
Query: 481 tagtgagaaaaaag 494
           ||||||||||||||
Sbjct: 681 tagtgagaaaaaag 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no393_c01.g1 MSMg01no393_c01.g1 CHROMAT_FILE:
MSMg01no393_c01.g1 PHD_FILE: MSMg01no393_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:55 2005
         (550 letters)



>mm_chr1_75986753_75987702
          Length = 950

 Score =  851 bits (440), Expect = 0.0
 Identities = 449/452 (99%)
 Strand = Plus / Minus

                                                                       
Query: 99  tactgcacccactggtgtgtttcaaaatgcaatattagactggcagtcctgctttgctta 158
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 950 tactgcacccactggtgtgtttcaaaatggaatattagactggcagtcctgctttgctta 891

                                                                       
Query: 159 gaggatgcataaggcctttgcattaaaacctttcttatagccttctgtcgtggtgtacac 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 gaggatgcataaggcctttgcattaaaacctttcttatagccttctgtcgtggtgtacac 831

                                                                       
Query: 219 catcagtaaggtagaaggagcatggcgatcacaatttcaaggccaacccaagctatagag 278
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 catcagtaaggcagaaggagcatggcgatcacaatttcaaggccaacccaagctatagag 771

                                                                       
Query: 279 taagctcctatctccaaaaacaatatgctttgtaccatatgtgtttgttcaggtggataa 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 taagctcctatctccaaaaacaatatgctttgtaccatatgtgtttgttcaggtggataa 711

                                                                       
Query: 339 ctgttaaatttcatatccatgaacaatattccataacccccatataccagccatttgctc 398
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 710 ctgttaaatttcatatccatgaacaatattccataacccccgtataccagccatttgctc 651

                                                                       
Query: 399 acaattctgtttaaatttctttctaattaagctgtagacataaattcaaccttcaacttg 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 acaattctgtttaaatttctttctaattaagctgtagacataaattcaaccttcaacttg 591

                                                                       
Query: 459 ttattttaataataattgtaacaattaacccataagtgttttatcactaacaattattaa 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ttattttaataataattgtaacaattaacccataagtgttttatcactaacaattattaa 531

                                           
Query: 519 ataataacttgtatgctcattaacataataag 550
           ||||||||||||||||||||||||||||||||
Sbjct: 530 ataataacttgtatgctcattaacataataag 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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