XXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCCTGAT
CTTTCCAAACTTTTATCATGAATGGGTGTGGGATCTTGTCAAATGCTTTT
TCTGCATCGGACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTAT
ATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGCATTC
CTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCT
TGGATTCGGTTAGCAAGAATTTTATTGAGGATTTTTGCATCGATATTCAT
AAGAGGAGTTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTTTCTGTGGTT
TAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCT
TCTACTTCTATTTTGTGAAATAGTTTGTGCAGAACTGGAATTAGATCTTC
TTTGAAGGTCTGATAGAACTCTGCACTAAACCTGTCTGGTCCTGGGCTTT
TTTTGGCTGGGAGACTATTAATAACTGCTTCTATTTCTTTAGGTGATATG
GGACTGTTTAGATGGTCAACTTGATCCTGACTCAACTTTGGTACCTGGTA
TCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCCAGTTTGGTGAAT
ATAACCTTTTTTAAAAGATCTGAAGGTGTTTTTGATTTCTTCCCGAACTG
TTGTTATGTCTCCCCTTTCCTTTTTCGAATTTGTAAATAAGAAATTTGCG
CCCGGGCCCCTTTATAAACAAAA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGACAAGGAGTACTTTGCCATTTTCAAGTCTTC
ATGTTTCCTTCTCTTGATTTCTCCCTTTTCTCTCATTTGACTTGCTAATT
TCAGCATCAGGTTGAGCACAAAGGGTTCTCAAAGTAGATAAACATCTCAC
CCTCATCCAAACACCATTTCATCTGTGAGGTAGAAGGAAAGTGGTGGTTG
CAAGAAAGCAAAACCTGCAGAATGGAGGCCTCCACCGAGACAAAGTTTTG
TTGTTCCAAACTCTGTTTAAGGGTAATGTAAATTGGTCATGGCTACTTTT
CTCTGTTCTGTCATGAGAAGTCTTTGTTATACCTTCTAAAGGGGGAATGT
CGATATTTTAACTTTGAAAGATGAGGTCTTTCAGGAATCCATTTCATGAG
GAGATTTTTGTTTGTTTTTCTGACTTTTGGGATTTTTTTGTTTTGGTTTT
GGTTTTGTTTTTGGTTNNGTTTGNNTTTTTTNNNTNNNTTTNNNTTTTNT
NTTTTNNNTNNNNTTTNTTNNTTTTTTTTTTTTTTTTTTNTTTTTTTTNN
TTTTTTTTTTTTNNNTTTTTTTTTTTTTTTNTTTTTTTTTTTTTNNTTTT
TTTTTTTTTTTTTTTTTCTTNTTTTTTTTTTNTTTTTTTTTTTNTTTTTN
TTTTTTTTTTNTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTT
TTTTTTTT

Query= MSMg01no393_d18.g1 MSMg01no393_d18.g1 CHROMAT_FILE:
MSMg01no393_d18.g1 PHD_FILE: MSMg01no393_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:06 2005
         (427 letters)



>mm_chr1_160686001_160686828
          Length = 828

 Score =  766 bits (396), Expect = 0.0
 Identities = 420/428 (98%), Gaps = 1/428 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagacaaggagtactttgccattttcaagtcttcatgtttccttctcttgatttctccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 cagacaaggagtactttgccattttcaagtcttcatgtttccttctcttgatttctccct 569

                                                                       
Query: 61  tttctctcatttgacttgctaatttcagcatcaggttgagcacaaagggttctcaaagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tttctctcatttgacttgctaatttcagcatcaggttgagcacaaagggttctcaaagta 509

                                                                       
Query: 121 gataaacatctcaccc-tcatccaaacaccatttcatctgtgaggtagaaggaaagtggt 179
           | |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 508 ggtaaacatctcacccttcatccaaacaccatttcatctctgaggtagaaggaaagtggt 449

                                                                       
Query: 180 ggttgcaagaaagcaaaacctgcagaatggaggcctccaccgagacaaagttttgttgtt 239
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ggttgcaggaaagcaaaacctgcagaatggaggcctccaccgagacaaagttttgttgtt 389

                                                                       
Query: 240 ccaaactctgtttaagggtaatgtaaattggtcatggctacttttctctgttctgtcatg 299
           ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 388 ccaaactctatttaagggtaatgtaaattggtcatggctacttttctctgctctgtcatg 329

                                                                       
Query: 300 agaagtctttgttataccttctaaagggggaatgtcgatattttaactttgaaagatgag 359
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 328 agaagtctttgttataccttctaaagggaaaatgtcgatattttaactttgaaagatgag 269

                                                                       
Query: 360 gtctttcaggaatccatttcatgaggagatttttgtttgtttttctgacttttgggattt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gtctttcaggaatccatttcatgaggagatttttgtttgtttttctgacttttgggattt 209

                   
Query: 420 ttttgttt 427
           ||||||||
Sbjct: 208 ttttgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 828
Length adjustment: 9
Effective length of query: 418
Effective length of database: 819
Effective search space:   342342
Effective search space used:   342342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)