BAC Information

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BAC

Clone NameMSMg01-393D24
Chromosome1 (Build37)
Map Location 85,279,234 - 85,279,715
singlet/doubletsinglet
Overlap genenone
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik
Downstream geneLOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393D24.T7 (MSMg01no393_d24.b1)MSMg01-393D24.TJ (MSMg01no393_d24.g1)
ACCAG494592AG494593
length755767
length of high quality
(start - end)		486 (43 - 528)359 (71 - 429)
definitionCHROMAT_FILE: MSMg01no393_d24.b1 PHD_FILE: MSMg01no393_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:07 2005CHROMAT_FILE: MSMg01no393_d24.g1 PHD_FILE: MSMg01no393_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:07 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTAAATAAAAAAGAATGACAGCTCTATGTGACTATAAAAGACTTTGT
TTTCTTTTCTTCTTAGCAAGAAGAAAAAAACGTCCGAACTGGTCAAATTC
CAAAAGAAGACTGCAGAAAAAAAAGCCCCGTCAAGATGAGATGATGGGTA
AGGGGATGCTGGAGGAGACTCCAGCAAGGGGGTACAGGAGGAGGCTTCAG
CAAAGGCTGTAGATCTGATGGAGTTCGTTCTGAACTCACTGGATAGGCAG
GCACACAGGAGTTCTGGTCAGCACAGCGAACTGGCTTTAAATTTCACCAG
ACCTGTTTTGCCACTGAGTAAATGGTGAACTGGAACATGTTGGAATCCTG
TTCTGAGTTTACACAGCCCAAGGTGAAGGGTGCAGAGTGTCAGGTTTCCT
CTTTATTTATGCACATTAGGATGGCAACCATCCTTCCTAACTAAAGGGAG
AGTAAATAAATTTTGCTACTTTGAGATAAGGTACAGAAGAGCCTGGATCC
TAGCCCTGACAGGCAGTTCAGAGAAAAACCCCCAGAAAAGCTTCCAAAGG
TGTTCTCATGTCCCTGAATGCACCTGTCCTTGGGGAGGCACTTCCCAAGC
CCCAAAGGAAAAAGGGTGGGTCCCCCCCCCCCCCGGAAGGCCCTCCTCCT
TCCCAAATCCTGGTCCTTGCAAAACCCCTGGGTCTCGGCCACCCTCCCCC
CAAAG

ATGCTGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCACCCATTAGACCCTCGATGCACCTACG
GAGTGGTCAGATGATAGGTTGGTGGGGACCATCACCATCACAGTGCCAGG
TGTTCTCTTTAAAGGGCATAGATGAGGGAGCCACGTGCTTTCTCAGACTG
GTATCTTTGGTTTGGTTTTTCTGATATGATTTTAATTTGCTTATAGGAAT
CTACATACAGTCCCAGTTCACTCTAACAAGTTTATAGAGAGGACCTTCTC
TATACCCAGGAGTAAGTAATTTATCATCTGTGTTGTGTAGTCAGGGTTAA
GCAGATGGTGCTGTTCATACTTCCAGCCAGGCACAGAGTCATCTTACATC
TGCAAACAGAATCTAAAGCTTCTTGTANAAGAAGTCTCTCAGCCCGGCAG
TGATGTGAACACCTTTAATCCCAGCACAGGTGGGTCTCTGAGTTCGAGGC
CAGCCTGTGCTACAGAGCAAGTTTCAGGACAGCTTAAGCCCCTTAAAGAA
ACCCTGTTTTAATAAACCTACAAAACCTAACCCAAAACTACTTCTAAACC
TCCAGAAGGGAGAAACATTCTGGAAATAAAACTAGCCTTGGCATCTGAAA
CCCCTTTCTACTTTTTGTATAACCTGGTTCCCTGGTAGGAATTTGTCCCT
CTTTGTGTTTGGTTATAAAAAATGGCTTTATTCTCCTCCTACTGTTATAG
AGGTACCTTTTGTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_d24.b1 MSMg01no393_d24.b1 CHROMAT_FILE:
MSMg01no393_d24.b1 PHD_FILE: MSMg01no393_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:07 2005
         (486 letters)



>mm_chr1_85279030_85279915
          Length = 886

 Score =  816 bits (422), Expect = 0.0
 Identities = 467/482 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttaaataaaaaagaatgacagctctatgtgactataaaagactttgttttctt 64
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttaaataaaaaagactgacagctctatgtgactataaaagactttgttttctt 264

                                                                       
Query: 65  ttcttcttagcaagaagaaaaaaacgtccgaactggtcaaattccaaaagaagactgcag 124
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 265 ttcttcttagcaagaagaaaaaaacatccgaactggtcaaattccaaaagaagacagcag 324

                                                                       
Query: 125 aaaaaaaagccccgtcaagatgagatgatgggtaaggggatgctggaggagactccagca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaaaaaagccccgtcaagatgagatgatgggtaaggggatgctggaggagactccagca 384

                                                                       
Query: 185 agggggtacaggaggaggcttcagcaaaggctgtagatctgatggagttcgttctgaact 244
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agggggtacaggaggaggattcagcaaaggctgtagatctgatggagttcgttctgaact 444

                                                                       
Query: 245 cactggataggcaggcacacaggagttctggtcagcacagcgaactggctttaaatttca 304
           ||||  ||||||||||||||| || |||| ||||||||||||||||||||||||||||||
Sbjct: 445 cactatataggcaggcacacaagatttcttgtcagcacagcgaactggctttaaatttca 504

                                                                       
Query: 305 ccagacctgttttgccactgagtaaatggtgaactggaacatgttggaatcctgttctga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccagacctgttttgccactgagtaaatggtgaactggaacatgttggaatcctgttctga 564

                                                                       
Query: 365 gtttacacagcccaaggtgaagggtgcagagtgtcaggtttcctctttatttatgcacat 424
           | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 565 ggttacacagcccaaggtgaagggtgcagagtgtcaggtttcctctttatttatacacac 624

                                                                       
Query: 425 taggatggcaaccatccttcctaactaaagggagagtaaataaattttgctactttgaga 484
           |||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 625 taggatggcatccatccttcctaactaaaaggagagtaaataaactttgctactttgaga 684

             
Query: 485 ta 486
           ||
Sbjct: 685 ta 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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