BAC Information

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BAC

Clone NameMSMg01-393I17
Chromosome1 (Build37)
Map Location 17,609,437 - 17,609,826
singlet/doubletsinglet
Overlap genePi15
Upstream geneTceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1, Gdap1, LOC383495, Rbm6-ps1, Ppia-ps1_125.1
Downstream geneCrispld1, LOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393I17.T7 (MSMg01no393_i17.b1)MSMg01-393I17.TJ (MSMg01no393_i17.g1)
ACCAG494815AG494816
length776788
length of high quality
(start - end)
479 (38 - 516)422 (65 - 486)
definitionCHROMAT_FILE: MSMg01no393_i17.b1 PHD_FILE: MSMg01no393_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:31 2005CHROMAT_FILE: MSMg01no393_i17.g1 PHD_FILE: MSMg01no393_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAG
GCCCATACCTAAACATAATAAAAGCAATCTACAGCAAACCAGTAGCCAAC
ATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGAC
TAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAG
TATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATT
GGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATA
TATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAACA
GCTTTGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCC
TTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAAC
ACCGTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGACTCTAA
CTAAGGAAGTAAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAA
GAAATTAAAGAAGATCTTCTGAAGATGGGAAGATCTCCCATGCTCATGGA
TTGGCAGGATCAACATTGTAAAAATGCCTATCTTGCCAAAAGCAACCTAC
AGATTTCATGGATCCCCATCCAAATTCCACTCAATTCTTCACAAATTAAA
GGGAGGAAATTTGCAATTCCCTTGGGTAACAAAAACCTAGGAAGGCGAAA
ACTCTTCTCCGGGAAAAGAAACCCGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGCTATGCTAAACAAAAACAAAAAAGGAAAGAAACG
GTGCTCCTACTTCCAGTCTTTTCAACCCTGGGTCCTTAAATTATTTTATC
TAAAACAAAGCAAATTCAGAACAATTCACTTGAAGTTAATGCAATAGGGA
TATCAGTTTTGGGGAAGGATAGAAAAAAATGACATCTAATTGTAACATGG
GGGCATTACAAAATGACCTGTGAAATCAAAATGTATTAAAATAAATTGGT
TTCACAAAATCCTTTTTACAGAAACAAGGAACTTTACCAACCATGTTTTC
TCACATAATTAGAACAATTATATTCAAATTAATTTGCCCAAATCAACAAT
GCCAATATACTGTAACTTCCAAAGGCCAGATTGTGCATTTCAAATTCATG
AAATTGTCACATTTGATAGCATTAGAATCTTTCTCATCAATGAAAAAACA
TGGAATGTACTATTTTTAGTATGGGGACTANACATAATTATAATAAAATA
ATTTCTGAGGACTACTTAAGGGGGCCTACAAAACCATAAATTAAGTTTTG
ATCCAATTAAAAAAATATTTTTTTTCCTGGGAAAAAAGTGTAAAGAAGAT
GGGCCCTTACCTTTATTATTTGTGTTCGTGGAAGAAATCGCAATAAAGGT
CCCTCCGAGCGCATTAGATTTCNTCTCCGTCTTTGTGTGTCGTGTCTGGC
TCCTCTTTCCTCTGGGTTTAGTTGATTTGTTTGCGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_i17.g1 MSMg01no393_i17.g1 CHROMAT_FILE:
MSMg01no393_i17.g1 PHD_FILE: MSMg01no393_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:31 2005
         (422 letters)



>mm_chr1_17609237_17610058
          Length = 822

 Score =  700 bits (362), Expect = 0.0
 Identities = 383/390 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctatgctaaacaaaaacaaaaaaggaaagaaacggtgctcctacttccagtcttttca 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 590 tgctatgctaaacaaaaacaaaaaaggaaagaaatggtgctcctacttccagtcttttca 531

                                                                       
Query: 61  accctgggtccttaaattattttatctaaaacaaagcaaattcagaacaattcacttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 accctgggtccttaaattattttatctaaaacaaagcaaattcagaacaattcacttgaa 471

                                                                       
Query: 121 gttaatgcaatagggatatcagttttggggaaggatagaaaaaaatgacatctaattgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gttaatgcaatagggatatcagttttggggaaggatagaaaaaaatgacatctaattgta 411

                                                                       
Query: 181 acatgggggcattacaaaatgacctgtgaaatcaaaatgtattaaaataaattggtttca 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 410 acatgggggcattacaaaatgacctgtgaaatcagaatgtattaaaataaattggtttca 351

                                                                       
Query: 241 caaaatcctttttacagaaacaaggaactttaccaaccatgttttctcacataattagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 caaaatcctttttacagaaacaaggaactttaccaaccatgttttctcacataattagaa 291

                                                                       
Query: 301 caattatattcaaattaatttgcccaaatcaacaatgccaatatactgtaacttccaaag 360
           ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 290 caattttattcaaactaatttgcccaaatcaacaatgccaatatactgtaactttcaaag 231

                                         
Query: 361 gccagattgtgcatttcaaattcatgaaat 390
           |||||||| ||||||||||| |||||||||
Sbjct: 230 gccagattatgcatttcaaaatcatgaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)