BAC Information

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BAC

Clone NameMSMg01-393J20
Chromosome1 (Build37)
Map Location 80,209,366 - 80,388,186
singlet/doubletdoublet
Overlap geneA830043J08Rik, 2310015K22Rik, Cul3, EG620899
Upstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325
Downstream gene1700016L21Rik, Dock10, LOC665092, 9430031J16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393J20.T7 (MSMg01no393_j20.b1)MSMg01-393J20.TJ (MSMg01no393_j20.g1)
ACCAG494868AG494869
length776761
length of high quality
(start - end)		496 (37 - 532)480 (65 - 544)
definitionCHROMAT_FILE: MSMg01no393_j20.b1 PHD_FILE: MSMg01no393_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:37 2005CHROMAT_FILE: MSMg01no393_j20.g1 PHD_FILE: MSMg01no393_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,387,812 - 80,388,186)(80,209,366 - 80,209,845)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTA
ACTATCTAAGTTCTGGGGGTGTGCACAGGACATTGGACAAATCTCATAGT
TCTTTTAGCTATGATGAGATCAGCACTTAACAGTTTATACTAATGGTACC
TTTGATTTCATATTCAGCTAAGTCAGAGTTTAATGTCCTTATTTTATTAG
TTATCAATCCAGGAGTTAGAGAGATGCTCCACCAGTGAAGAAGTTCGTAT
ATAAGCAGGAGGACCAGAGTTCGGATCCCTAACATCCACATTAAAAGGCA
AGTGTACATGTCTATGACTGTAGTCCTGGGTAGGAAGAGACAGGAAGAGC
CATGGAGCTCACTGGGCAGCTAGTCCTGCTGGATTAGTGAGCAGCAGAAT
CAGTGAGAGACCCTCTTTCACAAAGTAAGGTGGAGAGTGGAAGATAGAGA
TATTCCACATTAACCTGTGGCCCACACCCTACACACATGCAAATGCATCT
ACATTTACATATGCACACATACAATAGTACACACAGAGACACGCACACAC
AAGTGATTAANATCAACTCTACTAAGAAAGTTACTGAATGCTTGAGACCA
CCAAAATACCTGAATCTCAATAGGTATATGATAATGAAAGGCATTGTCTC
CCTACAGGGTGAGAAAAGGGAGTCTGGAACCCCTGAGATGGGAAAAAATG
GCTTCTGTAAAAAAAAGGTTAGGTGAGGGAAAAAGAATTGGTGTGTACAC
CTTTTTCTTTTTTGAAAGGAGAACCC

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCTCTGTCTTCCTCTACTATTCGTCATTTTAATT
GGCCTGCTGTAGATGGACGGCCAAGTCTAGCTTGTTTGAGCTCCCAGGAT
CCTGGATCTGACCCTACTAAACCTGGTACACCCCAGAAATGAACGAAATG
AAATACCTGCAGCAGAATCTTATTGCCATCATAGTCCTGAGTCTGCCACC
TCGCGCTGCTGATGGGAACACACGGATTAGGTAGAAGAGGCACCAGCTGC
CCGATCTCTTGAACCCTGAACTGCAGCACAGAAGACCCCTTGGGGTCTAC
TGACATTCCCAGGGGCAGCTGCTTCAGAGAGAGCTGCAGGCTGAAGCCCT
CGGTGGCATAGAGGACAAAGAAACAGAAGTCGCTCTTTTGCACAGTGGCG
TCTCTCTGTAGAAGCATCTCATAGAGTCTGATGGCATCTTCATAGTTATC
AAAACTGCAGTACAGAGTCACCCTGAGGATATCAGTGCCACAATTCACTG
GCCTCATGCCCCACACTGGCATCTGGTTGTGCAGACTGTAAAATTCCTGA
TTGGCAGGTAGATAATAACAAGAACTCCCCTGTGCATGCTGGTTAGGGAA
AACCTGTCCCGGTTGACTGCCCAATAAATTTCAAACTTCTAACCTATTTT
TCTTGTTCCTCGGTTTTTCTGTAAGGAACAATCAAATTATACCTCTCTTG
GTTATGCGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_j20.b1 MSMg01no393_j20.b1 CHROMAT_FILE:
MSMg01no393_j20.b1 PHD_FILE: MSMg01no393_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:37 2005
         (496 letters)



>mm_chr1_80387812_80388707
          Length = 896

 Score =  679 bits (351), Expect = 0.0
 Identities = 369/375 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattaactatctaagttctgggggtgtgcacaggacattggacaaatctcatagt 64
           |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 375 gaattcattaactagctaagttctggggttgtgcacaggacattggacaaatctcatagt 316

                                                                       
Query: 65  tcttttagctatgatgagatcagcacttaacagtttatactaatggtacctttgatttca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcttttagctatgatgagatcagcacttaacagtttatactaatggtacctttgatttca 256

                                                                       
Query: 125 tattcagctaagtcagagtttaatgtccttattttattagttatcaatccaggagttaga 184
           || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 255 taatcagctaattcagagtttaatgtccttattttattagtcatcaatccaggagttaga 196

                                                                       
Query: 185 gagatgctccaccagtgaagaagttcgtatataagcaggaggaccagagttcggatccct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gagatgctccaccagtgaagaagttcgtatataagcaggaggaccagagttcggatccct 136

                                                                       
Query: 245 aacatccacattaaaaggcaagtgtacatgtctatgactgtagtcctgggtaggaagaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 aacatccacattaaaaggcaagtgtacatgtctatgactgtagtcctgggtaggaagaga 76

                                                                       
Query: 305 caggaagagccatggagctcactgggcagctagtcctgctggattagtgagcagcagaat 364
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  caggaagatccatggagctcactgggcagctagtcctgctggattagtgagcagcagaat 16

                          
Query: 365 cagtgagagaccctc 379
           |||||||||||||||
Sbjct: 15  cagtgagagaccctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no393_j20.g1 MSMg01no393_j20.g1 CHROMAT_FILE:
MSMg01no393_j20.g1 PHD_FILE: MSMg01no393_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:37 2005
         (480 letters)



>mm_chr1_80209166_80210045
          Length = 880

 Score =  905 bits (468), Expect = 0.0
 Identities = 477/480 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctctgtcttcctctactattcgtcattttaattggcctgctgtagatggacggccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctctgtcttcctctactattcgtcattttaattggcctgctgtagatggacggccaa 260

                                                                       
Query: 61  gtctagcttgtttgagctcccaggatcctggatctgaccctactaaacctggtacacccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctagcttgtttgagctcccaggatcctggatctgaccctactaaacctggtacacccc 320

                                                                       
Query: 121 agaaatgaacgaaatgaaatacctgcagcagaatcttattgccatcatagtcctgagtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaatgaacgaaatgaaatacctgcagcagaatcttattgccatcatagtcctgagtct 380

                                                                       
Query: 181 gccacctcgcgctgctgatgggaacacacggattaggtagaagaggcaccagctgcccga 240
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 381 gccacctcgcgctgctgatgggaacacacggattgggtagaagaggcaccagctgcccaa 440

                                                                       
Query: 241 tctcttgaaccctgaactgcagcacagaagaccccttggggtctactgacattcccaggg 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 tctcttgaaccctgaactgcagcacagaagactccttggggtctactgacattcccaggg 500

                                                                       
Query: 301 gcagctgcttcagagagagctgcaggctgaagccctcggtggcatagaggacaaagaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcagctgcttcagagagagctgcaggctgaagccctcggtggcatagaggacaaagaaac 560

                                                                       
Query: 361 agaagtcgctcttttgcacagtggcgtctctctgtagaagcatctcatagagtctgatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaagtcgctcttttgcacagtggcgtctctctgtagaagcatctcatagagtctgatgg 620

                                                                       
Query: 421 catcttcatagttatcaaaactgcagtacagagtcaccctgaggatatcagtgccacaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catcttcatagttatcaaaactgcagtacagagtcaccctgaggatatcagtgccacaat 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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