BAC Information

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BAC

Clone NameMSMg01-394C21
Chromosome1 (Build37)
Map Location 196,056,132 - 196,187,927
singlet/doubletdoublet
Overlap genenone
Upstream geneHsd11b1, G0s2, Lamb3, Camk1g, LOC667208
Downstream geneEG623172, Plxna2, Cd34, Cd46, Crry, Cr2, EG635956, LOC623380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394C21.T7 (MSMg01no394_c21.b1)MSMg01-394C21.TJ (MSMg01no394_c21.g1)
ACCAG495297AG495298
length771806
length of high quality
(start - end)		469 (51 - 519)401 (79 - 479)
definitionCHROMAT_FILE: MSMg01no394_c21.b1 PHD_FILE: MSMg01no394_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:28 2005CHROMAT_FILE: MSMg01no394_c21.g1 PHD_FILE: MSMg01no394_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(196,056,132 - 196,056,596)(196,187,527 - 196,187,927)
sequence
NNNNTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTCCCTAAATGACATAGACTAGTTTAACCATATTTTCAGT
CTATAAGGTAAGTTCTTTCAGACACACTGAAAACTGAGAAATTCAGTTGA
AATCAGGAAGAACACATTCCTTTGACCTGTAATTTCCTGCTAAAAGTTCC
ACCTTAAGGTGCAGAGAATAAGGAGGGTGAGCCTTGGAACTCTGTCTTTT
CCCTGCTCCCTGACACCCTGCCCAGTGTCTGGTGGGACTGTTCTTTTCCT
CTTGACACCTCTGCACACCTGCCCTGGAACAGAGTGTTGGCTCCTTTCTC
TGCCTGCAGAGAATTCACACTCTCCAAAGGTAGCTGCATGCTGTCCTTGT
GAGGAAATAGGACTTCACAGTGCATGACCGTCTAATTCATAAATAAATAT
TACACATGTTCCCAGGCGGCCCATTAGCCAGTTAGAGCAATCAGCATCTC
TACCAATTAAAATCCTTTCCAAGACTTAAGTCTGTTGGCTCTAGGAAACA
AGAAGCCTAATAGCCAGGCAGATATACCTGAATGGAAACAGCACCACTCT
GCTTCAGGGAAAAAGATTGCTGGCTGTAAATGGACGGCTATAAAAATGCA
AGGGGGTGTCCGGGAAGGTAGTATCCCAATGAAAAGATCAGGCGAGAAAG
GCTTTTATTCCCCCAACCGCCGTGAGAGAAAAAGGTTTGTTGTAAAACAG
CCCGAAGCCGAAAAAGTTTTT

NNNCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGACCAACTTGGGCTACATGC
AAGACCTTACTTTAAAATAAAATAAAAGGAGGACAGATAGAGCTATTACT
TAGATCATGTAATACTTTTTGGAATGGAGATCAATTGTTTCAAGTCAAAG
TATCTGGCTCTGGACTTGGCATAATGAAGAGGCTTAATAAATAGACAAAT
GCTGGTTGTCCGGGAGACAGTGTGCCCTCTGCACTAATCCCTGAGGAGAG
TGAACACGTGTTGTTCCCAAACTAGGACTGCACCCAGCTTAGTTCAAAAA
ACCATGTGCCATGGCCTGAGGGAGGAGGTGACTCCAGAAAAGCTCTTCCA
AGACTAACAACCAGTGATTGCCCAGCATGAATATACAACTCTCTAAATCA
TTGAAATTTTCTGAATTTTGAATAACTCCCCCACATAGAAAGTACTGGAA
GGGTAGAAAAGGGAGTTGTGGGAAATGGAGAAAAGTGGAGGAAGACAGAA
AAAGCTCCTTGAAAACCTTATTAACCAACCTGAAATTTTAAAGAGGGAAA
TTTCTTTTTAACCCCCCCCCCCCCCCTTGATGGGGATTTACGTGGGCCTT
GTGTTTTTTTCTTGGGTCCTCCAAACAAATTGACCCCAACCTTCGCTCTT
TTCTGGATTAAAAACAAAAGGAAATTACCCTCGCCGTACAAAAAAAATGT
TTTACCATAAAACGGTTCCATTTTTTTTCCTTTCCTCCCTTTATCTTTCT
CTCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_c21.b1 MSMg01no394_c21.b1 CHROMAT_FILE:
MSMg01no394_c21.b1 PHD_FILE: MSMg01no394_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:28 2005
         (469 letters)



>mm_chr1_196055928_196056796
          Length = 869

 Score =  884 bits (457), Expect = 0.0
 Identities = 463/465 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttccctaaatgacatagactagtttaaccatattttcagtctataaggtaagtt 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattcttccctaaatgacatagactagtttaaccatattttcagtctataaggtaagat 264

                                                                       
Query: 65  ctttcagacacactgaaaactgagaaattcagttgaaatcaggaagaacacattcctttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttcagacacactgaaaactgagaaattcagttgaaatcaggaagaacacattcctttg 324

                                                                       
Query: 125 acctgtaatttcctgctaaaagttccaccttaaggtgcagagaataaggagggtgagcct 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 acctgtaatttcctgctaaaagttccaccttcaggtgcagagaataaggagggtgagcct 384

                                                                       
Query: 185 tggaactctgtcttttccctgctccctgacaccctgcccagtgtctggtgggactgttct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggaactctgtcttttccctgctccctgacaccctgcccagtgtctggtgggactgttct 444

                                                                       
Query: 245 tttcctcttgacacctctgcacacctgccctggaacagagtgttggctcctttctctgcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttcctcttgacacctctgcacacctgccctggaacagagtgttggctcctttctctgcc 504

                                                                       
Query: 305 tgcagagaattcacactctccaaaggtagctgcatgctgtccttgtgaggaaataggact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgcagagaattcacactctccaaaggtagctgcatgctgtccttgtgaggaaataggact 564

                                                                       
Query: 365 tcacagtgcatgaccgtctaattcataaataaatattacacatgttcccaggcggcccat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcacagtgcatgaccgtctaattcataaataaatattacacatgttcccaggcggcccat 624

                                                        
Query: 425 tagccagttagagcaatcagcatctctaccaattaaaatcctttc 469
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagccagttagagcaatcagcatctctaccaattaaaatcctttc 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no394_c21.g1 MSMg01no394_c21.g1 CHROMAT_FILE:
MSMg01no394_c21.g1 PHD_FILE: MSMg01no394_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:28 2005
         (401 letters)



>mm_chr1_196187327_196188127
          Length = 801

 Score =  752 bits (389), Expect = 0.0
 Identities = 398/401 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaccaacttgggctacatgcaagaccttactttaaaataaaataaaaggaggacagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cagaccaacttgggctacatgcaagaccttactttaaaataaaataaaaggaggacagat 542

                                                                       
Query: 61  agagctattacttagatcatgtaatactttttggaatggagatcaattgtttcaagtcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 541 agagctattacttagatcatgtaatactttttggaatggagatcaattgttccaagtcaa 482

                                                                       
Query: 121 agtatctggctctggacttggcataatgaagaggcttaataaatagacaaatgctggttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agtatctggctctggacttggcataatgaagaggcttaataaatagacaaatgctggttg 422

                                                                       
Query: 181 tccgggagacagtgtgccctctgcactaatccctgaggagagtgaacacgtgttgttccc 240
           || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 421 tcagggagacagtgtgccctctgcactaatccttgaggagagtgaacacgtgttgttccc 362

                                                                       
Query: 241 aaactaggactgcacccagcttagttcaaaaaaccatgtgccatggcctgagggaggagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaactaggactgcacccagcttagttcaaaaaaccatgtgccatggcctgagggaggagg 302

                                                                       
Query: 301 tgactccagaaaagctcttccaagactaacaaccagtgattgcccagcatgaatatacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgactccagaaaagctcttccaagactaacaaccagtgattgcccagcatgaatatacaa 242

                                                    
Query: 361 ctctctaaatcattgaaattttctgaattttgaataactcc 401
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctctctaaatcattgaaattttctgaattttgaataactcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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