BAC Information

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BAC

Clone NameMSMg01-394H21
Chromosome1 (Build37)
Map Location 71,144,401 - 71,144,764
singlet/doubletsinglet
Overlap geneBard1
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809
Downstream geneLOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394H21.T7 (MSMg01no394_h21.b1)MSMg01-394H21.TJ (MSMg01no394_h21.g1)
ACCAG495536AG495537
length727769
length of high quality
(start - end)		99 (55 - 153)412 (85 - 496)
definitionCHROMAT_FILE: MSMg01no394_h21.b1 PHD_FILE: MSMg01no394_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:53 2005CHROMAT_FILE: MSMg01no394_h21.g1 PHD_FILE: MSMg01no394_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTTTCTCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTAATCTGCCATTCAACATGTGGCAAGGACCAGAGCA
GGAAGCAAATGTCGGTCCACAGGACAAGCTAGGATATTAAAACGATAACT
CANATACAGAAGAACAAATTGTAACTAACATGATAGATCTTGAAATANNN
AAGGGAGAGATGCTTTAGTCGTNAGCTGGCGCGGGGGGCGGGCGGTACGG
CGTGCGGGGGGGCCTGGGCTGGTNNNNNNTNNNTANNNNNNNGNNNNCCN
NNNNNNNNNNNNNNNCCCCCCACTTGTGACCGAAACCTTTGGAAATTTCT
GGAAACGGATTCCAACCCCCCTTCCGGAGGGGCCCCNGGAATCCCCAAAT
CCCCCAAGGGGTTCCCCCCCAATGGGGGGTTTTTTAAAAAGGGGGGGTTT
TTGCTGGNTTTTTTTATACCTCCGCGGCGTTTCCCCCAAATTTCCCTGCC
CCTTTTTTTCTTTTTATTAAATTTCCCTCCCCTCCCTCTTTCTCCCCTTT
TCTCCTCCTACCCCTCCTACTCTTCACTCTCCCCCCCTCCCCCCTTTCCC
TTCCCTCTTTCCCCCCTCCCCCTCCCCCCCCCTTCNCNAAAAACANTCTT
TTCTTTTCTCTCTTTCATACATCACATTAAACCCCCACCCTTTCCCCCCT
CTTATCCCCTCACTTTTTTCTTTCTTG

NTTTTTTTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGACAGGAAGGTGGA
CGTAGGAACTGAAACAGAAACTGTGCAATACTGCCTGCTCTCTAACTAGA
TAGAGCTCAGCAGTCTTGCTTAGCCAGCCCAGGCCCAACTGCCTAGGGAG
GGTGCTGCCCACAGTGGCCCGGGCTCTCCACATCAATTGTCAGTCAACAC
AGCCAATCTGTTAAGGCAGTTTTTCAGTTGAAGTTCCCTTGACCCAAGTG
ACTCTAGGTTGTTTGTAATTGACAGTTAAAACATAAGAATAAAAGAATTA
GCGCAGTTAGCTTCCCGAGGAGGGCTATTCATATGACTTTCCTGAAATCT
GTGTCCTTAGCTATTAAATGATGAATATAACTGAATTGGCTTTTANAGTT
GTCTCCAATATTCAGACTTCATAATTATTAGCATTGTTTACAGCTTTTAA
TAAAAATAACATCTATGTAAAAGCGGGGCACAGATTGTTAGTGCCCATAT
CCTCCAGTCTAGAATTCTTTTATTCTGGAATTTATTTTAGGGGCCCCTTT
ACTATTTGGCTGGAGCCACCCCCCTCTCATTATGGAAAGGTCCCCCAAAG
AAAAGGCTCCCCTTTTTTACCCCCCGGGCCCAAAAATAAGGTTCCCCCGC
TTTATAATAATTGACGGGAAAAAAATTATTTCCAGGTATGTCCCCCCCTT
CCCTGTGGGTGGGGGCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_h21.g1 MSMg01no394_h21.g1 CHROMAT_FILE:
MSMg01no394_h21.g1 PHD_FILE: MSMg01no394_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:53 2005
         (412 letters)



>mm_chr1_71143953_71144764
          Length = 812

 Score =  675 bits (349), Expect = 0.0
 Identities = 360/364 (98%)
 Strand = Plus / Minus

                                                                       
Query: 49  gcctgctctctaactagatagagctcagcagtcttgcttagccagcccaggcccaactgc 108
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 gcctgctctctaactagatagagctcagcagtcttgcttagccagcccaggcccaactgc 753

                                                                       
Query: 109 ctagggagggtgctgcccacagtggcccgggctctccacatcaattgtcagtcaacacag 168
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 752 ctagggagggtgctgcccacagtggcccgggctctccacatcagttgtcagtcaacacag 693

                                                                       
Query: 169 ccaatctgttaaggcagtttttcagttgaagttcccttgacccaagtgactctaggttgt 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ccaatctgttaaggcagtttttcagttgaagttcccttgacccaagtgactctaggttgt 633

                                                                       
Query: 229 ttgtaattgacagttaaaacataagaataaaagaattagcgcagttagcttcccgaggag 288
           |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 632 ttgtaattgacagttaaaacataagaataaaagagttagtgcagttagcttcccgaggag 573

                                                                       
Query: 289 ggctattcatatgactttcctgaaatctgtgtccttagctattaaatgatgaatataact 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ggctattcatatgactttcctgaaatctgtgtccttagctattaaatgatgaatataact 513

                                                                       
Query: 349 gaattggcttttanagttgtctccaatattcagacttcataattattagcattgtttaca 408
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaattggcttttaaagttgtctccaatattcagacttcataattattagcattgtttaca 453

               
Query: 409 gctt 412
           ||||
Sbjct: 452 gctt 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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