BAC Information

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BAC

Clone NameMSMg01-394P19
Chromosome1 (Build37)
Map Location 128,512,862 - 128,513,267
singlet/doubletsinglet
Overlap geneE030049G20Rik
Upstream geneLypd1
Downstream geneLOC383559, Mgat5, LOC667090, Tmem163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394P19.T7 (MSMg01no394_p19.b1)MSMg01-394P19.TJ (MSMg01no394_p19.g1)
ACCAG495913AG495914
length804801
length of high quality
(start - end)
405 (73 - 477)177 (74 - 250)
definitionCHROMAT_FILE: MSMg01no394_p19.b1 PHD_FILE: MSMg01no394_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:35 2005CHROMAT_FILE: MSMg01no394_p19.g1 PHD_FILE: MSMg01no394_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTACAAATCCGC
GGAATTCCAATATGTTTCCTAATAGCTCAAAGAATCAGAATGTTGCTGTG
GTTCTTAATAAATATACTGCACAATTAGTTCTGAAATATACAAACAAGTT
CATGTAAAAGTTCATTGAATTGTTGAAAGTTTTAATGCATTTCATTTCAT
AAATTAGACTGTAACTTGGCTCAGCTAATGATTCCATTTTCTCTTTGGTG
CTTCATCCCAAATCTGAAATGCTTGTCTTTTGGTGGATAGGGATTTTTCT
CATATTCTTAACCTTGTATTACACCTCTTGTTCATGTGTGTGCATGCTCA
AATATGTATAAGTAAACATGTGTGTGCATTCATAGAGAGAGAGTACAGAT
AGTAACCATAGTCATTTCTCAAGCATGACCCATATTTTTGAGACAAGTCC
CTCACTAACCTAGAGCTCACCAAATAGGCTGAAGTGCCCAGTGAGCCCAA
GGAACCAGCTCTCTCTCCTTCCCTAGNCGTGGAATTAAAAACAATTGGCA
GCTTGTCGGGGTTTTTTAAGCGGGGCTTACCGGTATCAAATCCCTTACCT
CTTATTTTTTCTCCAAGTATTTTATTCTTTCCCCCCCTCTCTTTCTTTTA
AATCCTTACACAACCCTCGGCTCTCACCCTCCTTGTACAACTAAAATCTC
TCTTTCCTTCGATATCCCCCCCTTTTACAACCTCCTAAAATACAAACCTT
ATACCTATTTCCTATTTCCCCTTATTTCTTCTTCCCATTTTTCACTCTTC
CCCG
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGGGTATCTTGGTATCTTTTCTTCC
AAATTGTCCTTGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCT
CTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCTCCAT
CTCCGTCTGCATGTCCCCCCTCTCTCTCTCACCAAAAACACACCCCACAC
ATGATAAATTATGTAAACAAGCTAGCATTCTCTCCTGTGTGTTCAGTGAG
CGGAGAGACTACTGGGAGACATATTGCGGAGGAATACCACGCCATATCCC
AGAGGGAGATCCCCCACTGAGTCTCTAGAATAAGCAAACGTGATGTGGAA
ACGACAGTGAGGAGAGAGGTGAAACAGGGTAATCCCTAGGGCATAAAAAG
AGGGAGAGAAAGAGTAAACTTGCATAGGGGAAACATAGAAGAACTTAGTA
GCCTGAATGGACACCGGACGGGGTTTTGGAAATTTAGAATCGAAAAGCTG
GCGGGATAAATGGATGTTTGTCAAAAACAAAAGAGCTAACGCGCTGAAGC
AAAACTTAGAGACAGGATTCGACGAATATTTGGTTATGCGTAATCGATAT
AAGGCAACATCGTAATTGGGCCCTCTAATCTGCGAGTACACAATCAGGCG
ATAAATAAAGAGACAAACGTTGAAAAACCAATAATATGTAGTCAACCATT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_p19.b1 MSMg01no394_p19.b1 CHROMAT_FILE:
MSMg01no394_p19.b1 PHD_FILE: MSMg01no394_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:35 2005
         (405 letters)



>mm_chr1_128512662_128513467
          Length = 806

 Score =  723 bits (374), Expect = 0.0
 Identities = 398/406 (98%), Gaps = 1/406 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagctcaaagaatcagaatgttgctgtggttcttaataaatatactgcacaattagttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagctcaaagaatcagaatgttgctgtggttcttaataaatatactgcacaattagttct 260

                                                                       
Query: 61  gaaatatacaaacaagttcatgtaaaagttcattgaattgttgaaagttttaatgcattt 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaatacacaaacaagttcatgtaaaagttcattgaattgttgaaagttttaatgcattt 320

                                                                       
Query: 121 catttcataaattagactgtaacttggctcagctaatgattccattttctctttggtgct 180
           ||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||
Sbjct: 321 catttcataaattagaccgtaacttggctcatttaatgattccattttctctttggtgct 380

                                                                       
Query: 181 tcatcccaaatctgaaatgcttgtcttttggtggatagggatttttctcatattcttaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatcccaaatctgaaatgcttgtcttttggtggatagggatttttctcatattcttaac 440

                                                                       
Query: 241 cttgtattacac-ctcttgttcatgtgtgtgcatgctcaaatatgtataagtaaacatgt 299
           |||||||||||| | | ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 cttgtattacacacacatgttcatgtgtgtgcatgctcaaatgtgtataagtaaacatgt 500

                                                                       
Query: 300 gtgtgcattcatagagagagagtacagatagtaaccatagtcatttctcaagcatgaccc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtgcattcatagagagagagtacagatagtaaccatagtcatttctcaagcatgaccc 560

                                                         
Query: 360 atatttttgagacaagtccctcactaacctagagctcaccaaatag 405
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatttttgagacaagtccctcactaacctagagctcaccaaatag 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 806
Length adjustment: 9
Effective length of query: 396
Effective length of database: 797
Effective search space:   315612
Effective search space used:   315612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)