BAC Information

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BAC

Clone NameMSMg01-395D19
Chromosome1 (Build37)
Map Location 190,299,721 - 190,300,088
singlet/doubletsinglet
Overlap geneUsh2a
Upstream geneEsrrg, 9330162B11Rik
Downstream geneKctd3, Kcnk2, LOC100042424, LOC100039307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395D19.T7 (MSMg01no395_d19.b1)MSMg01-395D19.TJ (MSMg01no395_d19.g1)
ACCAG496103AG496104
length770775
length of high quality
(start - end)
566 (41 - 606)505 (74 - 578)
definitionCHROMAT_FILE: MSMg01no395_d19.b1 PHD_FILE: MSMg01no395_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:01 2005CHROMAT_FILE: MSMg01no395_d19.g1 PHD_FILE: MSMg01no395_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAAT
TCTTATATTTTCGTTTGTGAGCCTAGCCTTTAATGGCTGAGCCATCTCTC
CAGCCCAAGGTTTATTTTATTTATATAACTGTAGTTGTCTTCAGGCACAC
CAGAAGAGGGCATCAGATCCCAATATAGATGGTTGTGAGCCACCGTGTGG
TTTCTGGGAATTGAACTCAGGAGACAAAGTGTGGAGCAGAGATGAGACAG
AAGGAAAGGCCATTCAGAGACTGTCTCAACTCTGGATCCATCCCATAGTC
AGTCACCAAACCCAGGACTCTATTGTGGATGATGAGAAGTGCTTGCTGAC
AGGAGCCTGACATGGCTGTCTCCTGAGAGCCTCTGCCAGAGCCTGACAAA
TACAGAGGCAGATGCTCACAGCCAACCATTGGACTGAGCACGGTGTCCCT
GATGGAGTTGGAGAAGAGACTGAAGGAGCTGAGAGGATATGCAGCCCCAT
GGGGGGAACAATGATGTCAACTGGCCAGATCCACTGGAGCTTCCAGGGAC
TGGACCACCAACCAAAGAGTGCATGTGAAGGGACCCATGGCTCTGGCCGC
ATATGTGGCAGAGGATGGCCTTGTTGGACATCATTGGGAGGAGTGGCCCT
TGGGTATGAGGGTGTTCGATGCCCCCGTGTAAGGGAATGCCAGGTTTATA
ACACCGGAGTGTTTTTGTTTTTGTCTTCTATTTCTTTCCTCCCCTTTTTT
CCCTCTTTTTTCTCTACCCN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAAGACATTGATAAGAAGAGTAGCCAG
AGCAAGACGAAGCACTTGAGGATGAAGAATCTTCATAGAGCCCTACTCAG
GAAGGAACCAGTACAGAAGGAAGCAAAAAACATGTACTGAGGACAAAGCA
GCTCTTGTTTTCAATTTCCTGACAGCATTGAACCAGGGGTCTGTAAGGGA
AGGTTCTGATGTTAAAAGTCCTGTTCCCCAATTGGCTCTTGATGTATCAG
TAAAGAAGGCTGGGAGTCAATTGACGAGTGGAAGGTACAGGTGGGATTTC
AGGGTCCCAAGAGGAAAAGGCAGACACAAGAAGAGCTTTGGTTCCATGCT
TTGGAGGAAGAAGACCACAGCAATCATGTGAGGTCTTGGGGAGGGGGAAC
TTGGACCTGTGGCCTCCACTACAGGCGAGTGGCCAAGGATGTTTGGCAGG
GGCTAAGTGGGACTAGCCACGGAAGTTTAGGGCAAGTGGAGGGATGGAGA
TAATAAATTGGTAAGGGCATGGTTTTGCAGTCAGGAGATAGTGACACCCA
GCAAATGTGCAAAAAAGGCAAATTATAAAGGAGCGGCTGCATGTGACTTT
TATTCCAGATTTCCAGGGTTGTGTTTGCAAGCTGTTATAAACACTTCTTG
GAGCTGAACTGTTTGTACCAAACGGAATCTTGGCTGGGTCTATGCTGTTT
CCCCACTGTCCCCAGTTCTCCATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_d19.g1 MSMg01no395_d19.g1 CHROMAT_FILE:
MSMg01no395_d19.g1 PHD_FILE: MSMg01no395_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:01 2005
         (505 letters)



>mm_chr1_190299721_190300625
          Length = 905

 Score =  654 bits (338), Expect = 0.0
 Identities = 359/368 (97%), Gaps = 4/368 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagacattgataagaagagtagccagagcaagacgaagcacttgaggatgaagaatctt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 368 taagacattgataagaagagtagccagagcaggacgaagcacttgaggatgaagaatctt 309

                                                                       
Query: 61  catagagccctactcaggaaggaaccagtacagaaggaagcaaaaaacatgtactgagga 120
           |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 308 catagagccctactcaggaaggaaccagtacagaaggaagcaaagaacatatactgagga 249

                                                                       
Query: 121 caaagcagctcttgttttcaatttcctgacagcattgaaccaggggtctgtaagggaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 caaagcagctcttgttttcaatttcctgacagcattgaaccaggggtctgtaagggaagg 189

                                                                       
Query: 181 ttctgatgttaaaagtcctgttccccaattggctcttgatgtatcagtaaagaaggctgg 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 188 ttctgatgttaaaagtcctgttccccaattggttcttgatgtatcagtaaagaaggctgg 129

                                                                       
Query: 241 gagtcaattgacgagtggaaggtacaggtgggatttcagggtcccaagaggaaaaggcag 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gagtcaattgatgagtggaaggtacaggtgggatttcagggtcccaagaggaaaaggcag 69

                                                                       
Query: 301 acac----aagaagagctttggttccatgctttggaggaagaagaccacagcaatcatgt 356
           ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  acacaaggaagaagagctttggttccatgctttggaggaagaagaccacagcaatcatgt 9

                   
Query: 357 gaggtctt 364
           ||||||||
Sbjct: 8   gaggtctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)