Query= MSMg01no395_f20.b1 MSMg01no395_f20.b1 CHROMAT_FILE:
MSMg01no395_f20.b1 PHD_FILE: MSMg01no395_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:11 2005
(486 letters)
>mm_chr1_93456254_93457139
Length = 886
Score = 909 bits (470), Expect = 0.0
Identities = 479/482 (99%)
Strand = Plus / Plus
Query: 5 gaattcagtcacttgcgtgactcagtgtgactgtttaccattgttcctccctcatccttt 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtcacttgtgtgactcagtgtgactgtttaccattgttcctccctcatccttt 264
Query: 65 tgacacgacagagccttccagagaacagatgagtgataactcagaacaacctgagaagac 124
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgacacgacagagcctcccagagaacagatgagtgataactcagaacaacctgagaagac 324
Query: 125 aatactgtcagccaacaagggaacagagaagctgagctcctggtctgggatggaaggttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatactgtcagccaacaagggaacagagaagctgagctcctggtctgggatggaaggttc 384
Query: 185 tggtgcctctgagaccagcaggactggctaccacactctaggcagtcgaactccctttgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggtgcctctgagaccagcaggactggctaccacactctaggcagtcgaactccctttgg 444
Query: 245 ccccatgggagacaacattgagcctttagtctgcacaactttctgcagtaagtgcagcca 304
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 ccccatgggagacaacattgagcctttagtctgcacaactttctgcagaaagtgcagcca 504
Query: 305 ccagaaacttttctgaaaatccacatcagctccaaagggaagactggtagatagcaacac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccagaaacttttctgaaaatccacatcagctccaaagggaagactggtagatagcaacac 564
Query: 365 agtgtgtggatccacttccgctccaaaggaaagactggtagttagcaatgcagtgtgtgg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtgtgtggatccacttccgctccaaaggaaagactggtagttagcaatgcagtgtgtgg 624
Query: 425 ccaaagagacgatcaaacatgtcctccagaggattctgaagaggctcctgagaacttgag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccaaagagacgatcaaacatgtcctccagaggattctgaagaggctcctgagaacttgag 684
Query: 485 ct 486
||
Sbjct: 685 ct 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no395_f20.g1 MSMg01no395_f20.g1 CHROMAT_FILE:
MSMg01no395_f20.g1 PHD_FILE: MSMg01no395_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:11 2005
(429 letters)
>mm_chr1_93675804_93676632
Length = 829
Score = 768 bits (397), Expect = 0.0
Identities = 421/429 (98%), Gaps = 1/429 (0%)
Strand = Plus / Minus
Query: 1 ctcatgcgggaagcttaagatgtgtccagcaggtctagcaggacagagaagcttgtgatc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 436 ctcatgcgggaagcttaagatgtgtccagcaggtctagcaggacagagaagcttatgatc 377
Query: 61 cctctcagctctgtggaatttttattcagacaggcatggagatcacatcagtcacacagt 120
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 376 cctctcagctctgtggaatctttattcagacaggcatggagatcacgtcagtcacacagt 317
Query: 121 ctcagcatgtaggatgctaaatgggtaaagtgagaactgaaaaagatgcttctgccatgt 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 316 ctcagcatgtaggatgctaaatgggtaaagcgagaactgaaaaagatgcttctgccatgt 257
Query: 181 cctctgacaatagggcatcacaaactgcattaaggacatttggaaatggtattgttgggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cctctgacaatagggcatcacaaactgcattaaggacatttggaaatggtattgttgggc 197
Query: 241 gagaggtatggctcagtggtttacagcacactccaccattctaaaggacccaggttcaat 300
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 196 gagagggatggctcagtggtttacagcacactcca-cattctaaaggacccaggttcaat 138
Query: 301 tcccaggcctatagctccagatccaggagaagacaatacttctgacctccccaggcaata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tcccaggcctatagctccagatccaggagaagacaatacttctgacctccccaggcaata 78
Query: 361 gggctcaaatgcaaacccacacacagacacctgtagagagaatagcttgcgtagtgtatg 420
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 77 gggctcaaatgcacacccacacacagacacctgtagagagaatagcttgtgtagtgtatg 18
Query: 421 gatgctgca 429
|||||||||
Sbjct: 17 gatgctgca 9
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space: 344400
Effective search space used: 344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
