BAC Information

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BAC

Clone NameMSMg01-395G08
Chromosome1 (Build37)
Map Location 25,768,948 - 25,769,187
singlet/doubletsinglet
Overlap geneBai3
Upstream geneLmbrd1, 4930472D16Rik, LOC669171, LOC665595
Downstream gene4931408C20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395G08.T7 (MSMg01no395_g08.b1)MSMg01-395G08.TJ (MSMg01no395_g08.g1)
ACCAG496223AG496224
length771765
length of high quality
(start - end)
381 (72 - 452)244 (73 - 316)
definitionCHROMAT_FILE: MSMg01no395_g08.b1 PHD_FILE: MSMg01no395_g08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:14 2005CHROMAT_FILE: MSMg01no395_g08.g1 PHD_FILE: MSMg01no395_g08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTTCAATCTTTGCGTGCGCTAAACGAATCACTATTTCGAGAGGATCCG
CGGAATTCTCACCTGTACATACCAAATGGCAGAGAAGCACCTGAAAAAAC
GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAATAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGTTAAGATCAAAAATTCAGGTAACAG
CAGATGCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGT
GGGATTGCAAGGTTGTACAACCACTCTGGAAATCAGTCTGGTGATTCCTC
AGAAAATTGGACATAGTACTACCGGAGGATCCCACAATTCCTCTCCTGGG
CATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGA
TGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGCACATTTACACAAT
GGAGTACTACTCACCTATTATAAAGAATGAATGTTTGAAATTCCTAGGCA
AATGGATGGACCTGGATGGTTCCCTCCTGATTGAGTTTCTCATCACACAG
GTATTTCCCTCAATAATAATTTCCCTGTAACATTGTAATTTAACCCCCTA
AATTTTGTTTTTCTCCCCATTTTTTTAATCATTCTTTCCCTCCTCTTTTT
ACTTCCCTCAGATATTATCTCCCCTTCCGCCTACTCTTCTCGCTCTCTCC
CTTCTTATTTCCCTTATTTTN
CCTCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCCAGAGAAATTCTCTCTCTCTCTCTCTATCTCTCTC
TCTCTCTCTCTCTCTCGCTCCCTCTGTGTGTGTGTATAAAGGCTATTCTT
GTTTTAAATTAATAAATTACCCTCTATATAGCAGTAAGGATAAAATAAAT
TTTTATAATGTTTATGTATACTAATTTTCTTGCTTCTGTTTTTATCTTAT
GTTTTAAAGGAAGATACAATAACAATAATGGGTGAGTAACCAAATTATAT
AATTAAATATAGTTTTCCTTAGTAATGATACATTCATTTAAATGAAACTA
AGTCATATTATGAAAGTCAATCCAATTTTAAAGCATATAATCTGAAACAA
TGAAGATGTTACTTTACTTACTGAAAACAAGTGTGGGATTTCCTCAGCTA
CATTTTATTTAAAAAAAAATAATGCTAAAATATATTTGTGTTAAGTTTTT
TGTTGTTGTCGTTGTTGTTTTAACCTATATCCATTTTTATCTCCTTATTG
GATTCTTCTTAATTTCCTTTCGCACCAATTACTTATTACTTCTTCCCATT
TTTTATCTTTGTTATACCATCTTATCCTCCTCCAAAATTTCATAAACCTC
TTTATTTTTTTTTATTTTTCCTTTTCCCCTTTATTTTTATTATCCGATTT
ATTTAATTATATTTTTTCCCTTAACTTCCTTCCCATTCTATTCCCCTTCT
TTTTCTATTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_g08.g1 MSMg01no395_g08.g1 CHROMAT_FILE:
MSMg01no395_g08.g1 PHD_FILE: MSMg01no395_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:14 2005
         (244 letters)



>mm_chr1_25768744_25769387
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 238/242 (98%), Gaps = 2/242 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   tctctctctctctctctatctctctctctctctctctctctcgctccctctgtgtgtgtg 62
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tctctctctctctctctctctctctctctctctctctctctcgctccctctgtgtgtgtg 264

                                                                       
Query: 63  tataaaggctattcttgttttaaattaataaattaccctctatatagcagtaaggataaa 122
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 --taaaggctattcttgttttaaattaataaattaccctctatatagcagtaaggataaa 322

                                                                       
Query: 123 ataaatttttataatgtttatgtatactaattttcttgcttctgtttttatcttatgttt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ataaatttttataatgtttatgtatactaattttcttgcttctgtttttatcttatgttt 382

                                                                       
Query: 183 taaaggaagatacaataacaataatgggtgagtaaccaaattatataattaaatatagtt 242
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 383 taaaggaagatacaataacaataatgggtgaataaccaaattatataattaaatatagtt 442

             
Query: 243 tt 244
           ||
Sbjct: 443 tt 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)