This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
MSMg01-395G15
Chromosome
1 (Build37)
Map Location
51,113,979 - 51,114,408
singlet/doublet
singlet
Overlap gene
Tmeff2
Upstream gene
EG666962
,
EG666970
,
LOC100041993
Downstream gene
Sdpr
,
LOC383504
,
Obfc2a
,
Myo1b
,
EG667010
,
LOC667014
,
Stat4
Link
Open Mouse BAC browser
Click to get alignment info.
name
EG666962
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:666962
MGI:3648814
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein
name
EG666970
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:666970
MGI:3648160
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
pseudo
: _no_value
name
LOC100041993
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100041993
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 1 Protein
pseudo
: _no_value
name
Tmeff2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:56363
MGI:1861735
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Sdpr
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:20324
MGI:99513
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC383504
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:383504
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
pseudo
: _no_value
name
Obfc2a
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:109019
MGI:1923258
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Myo1b
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:17912
MGI:107752
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG667010
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:667010
MGI:3645596
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins
pseudo
: _no_value
name
LOC667014
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:667014
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 176 ESTs, 1 Protein
name
Stat4
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:20849
MGI:103062
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG666962
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149233864
GeneID:666962
MGI:3648814
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein
product
: predicted gene, EG666962
transcript_id
: XM_001487804.1
name
Tmeff2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141802899
GeneID:56363
MGI:1861735
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: transmembrane protein with EGF-like and two follistatin-like domains 2
transcript_id
: NM_019790.3
name
Sdpr
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:20270266
GeneID:20324
MGI:99513
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: serum deprivation response
transcript_id
: NM_138741.1
name
Obfc2a
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141802925
GeneID:109019
MGI:1923258
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: oligonucleotide/oligosaccharide-binding fold containing 2A
transcript_id
: NM_028696.3
name
Myo1b
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:86990449
GeneID:17912
MGI:107752
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: myosin IB
transcript_id
: NM_010863.2
name
LOC667014
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149233829
GeneID:667014
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 176 ESTs, 1 Protein
product
: similar to ribosomal protein L15
transcript_id
: XM_001477485.1
name
Stat4
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:144227227
GeneID:20849
MGI:103062
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: signal transducer and activator of transcription 4
transcript_id
: NM_011487.2
name
EG666962
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:149233865
GeneID:666962
MGI:3648814
definition
codon_start
: 1
product
: similar to RNA and export factor binding protein 1-II
protein_id
: XP_001487854.1
name
Tmeff2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:9790267
CCDS:CCDS14939.1
GeneID:56363
MGI:1861735
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
codon_start
: 1
product
: transmembrane protein with EGF-like and two follistatin-like domains 2
protein_id
: NP_062764.1
name
Sdpr
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:20270267
CCDS:CCDS14940.1
GeneID:20324
MGI:99513
definition
GO_component
: GO:0005829 - cytosol [Evidence ISS]
GO_function
: GO:0008289 - lipid binding [Evidence IEA]; GO:0001786 - phosphatidylserine binding [Evidence ISS]; GO:0005515 - protein binding [Evidence ISS]
codon_start
: 1
product
: serum deprivation response
protein_id
: NP_620080.1
name
Obfc2a
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:126723205
GeneID:109019
MGI:1923258
definition
GO_function
: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0006260 - DNA replication [Evidence IEA]
codon_start
: 1
note
: nucleic acid binding protein 1
product
: oligonucleotide/oligosaccharide-binding fold containing 2A
protein_id
: NP_082972.2
name
Myo1b
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:86990450
CCDS:CCDS14942.1
GeneID:17912
MGI:107752
definition
GO_component
: GO:0005856 - cytoskeleton [Evidence IEA]; GO:0016459 - myosin [Evidence IEA]
GO_function
: GO:0003779 - actin binding [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0003774 - motor activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO_process
: GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA]
codon_start
: 1
note
: molecular motor
product
: myosin IB
protein_id
: NP_034993.2
name
LOC667014
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149233830
GeneID:667014
definition
codon_start
: 1
product
: similar to ribosomal protein L15
protein_id
: XP_001477535.1
name
Stat4
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6755670
CCDS:CCDS14943.1
GeneID:20849
MGI:103062
definition
GO_component
: GO:0005634 - nucleus [Evidence IDA]
GO_function
: GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IDA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]
GO_process
: GO:0008283 - cell proliferation [Evidence IDA]; GO:0019221 - cytokine and chemokine mediated signaling pathway [Evidence IDA]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]
codon_start
: 1
function
: gamma interferon activation site-binding protein
product
: signal transducer and activator of transcription 4
protein_id
: NP_035617.1
name
EG666970
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666970
definition
number
: 1
pseudo
: _no_value
name
LOC383504
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:383504
definition
number
: 2
pseudo
: _no_value
name
LOC383504
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:383504
definition
number
: 1
pseudo
: _no_value
name
EG667010
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:667010
definition
number
: 1
pseudo
: _no_value
name
(CDS detail)
type
STS
link
xref
UniSTS:224565
definition
name
(CDS detail)
type
STS
link
xref
UniSTS:224755
definition
name
(CDS detail)
type
STS
link
xref
UniSTS:125569
definition
standard_name
: Results_ER_8_28_95_2_29.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:128894
definition
standard_name
: D1Mit528
name
(CDS detail)
type
STS
link
xref
UniSTS:124809
definition
standard_name
: D19367
name
(CDS detail)
type
STS
link
xref
UniSTS:128681
definition
standard_name
: D1Mit323
name
(CDS detail)
type
STS
link
xref
UniSTS:125462
definition
standard_name
: MHAa97d7.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:165078
definition
standard_name
: AI852561
name
(CDS detail)
type
STS
link
xref
UniSTS:234125
definition
name
(CDS detail)
type
STS
link
xref
UniSTS:162097
definition
standard_name
: RH125275
name
(CDS detail)
type
STS
link
xref
UniSTS:161371
definition
standard_name
: RH124549
name
(CDS detail)
type
STS
link
xref
UniSTS:209744
definition
standard_name
: RH126810
name
(CDS detail)
type
STS
link
xref
UniSTS:178395
definition
standard_name
: AW557864
name
(CDS detail)
type
STS
link
xref
UniSTS:212979
definition
standard_name
: RH129682
name
(CDS detail)
type
STS
link
xref
UniSTS:180002
definition
standard_name
: AF045565
name
(CDS detail)
type
STS
link
xref
UniSTS:128843
definition
standard_name
: D1Mit478
name
(CDS detail)
type
STS
link
xref
UniSTS:123724
definition
standard_name
: 26.MMHAP17FA5.seq
name
LOC100041993
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149233826
GeneID:100041993
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 1 Protein
product
: similar to gag protein
pseudo
: _no_value
transcript_id
: XR_033192.1
clone name
MSMg01-126B23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-351J05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-365A14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-444F18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-265M13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-267A13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-112I16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-063E11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-166C06
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-398K15
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-534P11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-061A08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-111A13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-524F22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-429C03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-408D11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-335A24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-305O09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-361C06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-346G23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-514O09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-054P24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-392M16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-396D05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-494F14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-140L17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-408L08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-141G09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-125B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-396N07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-491P17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-057O20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-234N21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-317M09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-342M05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-313A13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-293O17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-161E06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-370C16
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-418J04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-261F07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-107B04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-185C17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-465C23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-354E10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-173C19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-184H09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-288L17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-270J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-487B05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-198G16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-371E18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-313O04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-139M08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-404K13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-352B17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-186B07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-140P21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-516E22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-198F16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-395G15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-322D20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-161H19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-062J21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-096D22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-458D16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-417P02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-459F21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-346O18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-270B06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-500D23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-312N20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-118N10
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-409P11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-530P12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-317I16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-524O03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-507F19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-232I06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-062F18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-172J12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-295H06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-424B14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-305O06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-317L04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-488P10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-527N24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-544O16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-052B03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-441A02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-196D08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-510D07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-499H23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-452N05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-231N04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-331L01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-086B09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-106C15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-397H19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-408A05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-417O09
singlet/doublet
singlet
plural/unique
unique
clone name
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