BAC Information

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BAC

Clone NameMSMg01-395H12
Chromosome1 (Build37)
Map Location 77,888,294 - 77,888,781
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
Downstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395H12.T7 (MSMg01no395_h12.b1)MSMg01-395H12.TJ (MSMg01no395_h12.g1)
ACCAG496279AG496280
length1,283766
length of high quality
(start - end)
---486 (83 - 568)
definitionCHROMAT_FILE: MSMg01no395_h12.b1 PHD_FILE: MSMg01no395_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:20 2005CHROMAT_FILE: MSMg01no395_h12.g1 PHD_FILE: MSMg01no395_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAACTTATTAAGTTGGACAGTTTGGGNNGGGGGTGGGCGGTGTTGGGCGG
CCGTTATTTATGCCGCCGCTGCGCACATAGATAGCTGTGATATGAGAGAG
GTGCCATAATATTGCACGCGCGCGCCAACATCTATATTTTATCCCCGCCA
CCTCACACCTAACTTCTCCACTATTAGTTATACAGGATCACGTTTGTAGT
CGCGTTAATGGTCAGCAGAGAACATGATATATAAGATGAGAAAGACCAGT
GAGAGTGAGCAAGAAATGGATTGCAGAGGAGAAGAGAGATGAGCGAAACC
CGGGTATCCACTTACCCACCAGATGTTGACTCGTTGTTTGTCTGCCGCGT
TTGCCCACCCTCCGCCCACGCCGAGTATTATATGTATCACCACCACGCGA
GCAGCGCATACCGCCACCAAGTTTTTGGCGAATCATTACCGTGGAGAGCC
ACCAGAGAATTCTATCGTCTCACCCTAATAAAACGTGTCCCAAAAAAAAA
CCCGAACGCTTCTAGAGACTCCAAATGATAGATACGAACGACCTAATAGT
CGAGCGCGGAGCGAGGAAGAGAGATAGAAATAGAGGGTGTGATTGCACGC
GAGGTGTAGATAATATGTGTACGGCGGAGGTTCGAGTAGTGAGTGAGAGA
CCACGTCCGGTTGTCGTGCTCTGCTTAAATGTCCCGCCCGCCCGATAATG
AGTTAAGTAATATCGCAATAAATATAGTGATGTGAGCGAACACAACGCCC
CACACCAAGCAATCGTGTTGTTGCGCACCTCTATATATATTACCACCGCG
GTTGTGAGTTCGACCGTGGTTGTAGCTAGTATGACACGCCGCAGCGACAG
AAGAATACAGCGGCGTAGTGTAGTACACGCGCCCTCTTCACCTCCGCGCT
CCGTGGATTGATCGTGCGACATGTTGCTCGAGAACGTAATTGTGCTGCGT
CGTGATATAGTTGAATTCCACTCCCGCCCTCGTGACGCCTCTCGTTATTT
ACCTATAACAGGACNATAATCGCGCGCTGGTGATGCAGGGCTTTATTAGT
ACACGCCGTAGTGAATGGNCGTGTCCGCCCGCCGAACATGATACACGCCT
AATATCATATCGAAATCCTGCCACGTCCCACCCTATATATATAGCACGAC
GCCCGCCTCAAACGAAACACCACTATGATACGTGCATTCACACAACCACA
CAATGAGCGCCGGAAANTACGAATCGTGNCGCCGCACAAGAACTACAAGA
ACATGATTCCCTGTTTTGCCTACAAACCCAACN
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGAATATTACACACAGAAGAG
CAAGAAAGTTTCAGTCATGAAAGCATAAGAAAGAATAAAAGTCATAACAT
GATCAAGTAAACAAAGGAGAGCTAGAAAGGAAACTATGATGCCTAGCAGA
GTGAGCCAGAAAATCCCTTATACTAATGGGGGAGAGAGTAATGAGCAGGC
AATAATCCAACCAATCAGGAAAAAAAACTATAGGAATAAAAGAAATTTCA
ATAGAGGTTTAGCTGTACATCTTATGAGCTTACTAATAGAGCTTTATAGA
TTTGCTGACTGAAACAAAAACTAGATCCAAGTGTCCACACTTCATTGATA
AAGATACAGATTGAAAGCCAAGAGGTGAAATACAATCTGTCAATAAAAAG
GAAGGCAAAAAGAACAGACTTAGATTTTTGCTTTCAAATAAAGTAGACTT
CAAATGCAAATTAATCAAAAGAGGTAAGGTACATCCCTACACATTAAAAA
ATAGAATGATTTGTCAAGAATGTGTTACAATTATGAATATGCCGACNATA
AACATTGACAATCTCACTCTTACCAAAACAAAAAACCCAAATCAAAACTT
ATTTGATTCTCTAAGTCCGAACAGTCTCAATATATAAAAGGAAATGATTT
CAACATCTCCTACCCCATCTACTTAATCCCTCCCCATTTAAATTATAAAA
GGAAACCTCCCAATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_h12.g1 MSMg01no395_h12.g1 CHROMAT_FILE:
MSMg01no395_h12.g1 PHD_FILE: MSMg01no395_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:20 2005
         (486 letters)



>mm_chr1_77888094_77888981
          Length = 888

 Score =  909 bits (470), Expect = 0.0
 Identities = 483/488 (98%), Gaps = 2/488 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattacacacagaagagcaagaaagtttcagtcatgaaagcataagaaagaataaaagt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 atattacacacagaagagcaagaaagtctcagtcatgaaagcataagaaagaataaaagt 260

                                                                       
Query: 61  cataacatgatcaagtaaacaaaggagagctagaaaggaaactatgatgcctagcagagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataacatgatcaagtaaacaaaggagagctagaaaggaaactatgatgcctagcagagt 320

                                                                       
Query: 121 gagccagaaaatcccttatactaatgggggagagagtaatgagcaggcaataatccaacc 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 gagccagaaaatcccttatactaataggggagagagtaatgagcaggcaataatccaacc 380

                                                                       
Query: 181 aatcaggaaaaaaaa--ctataggaataaaagaaatttcaatagaggtttagctgtacat 238
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcaggaaaaaaaaaactataggaataaaagaaatttcaatagaggtttagctgtacat 440

                                                                       
Query: 239 cttatgagcttactaatagagctttatagatttgctgactgaaacaaaaactagatccaa 298
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcatgagcttactaatagagctttatagatttgctgactgaaacaaaaactagatccaa 500

                                                                       
Query: 299 gtgtccacacttcattgataaagatacagattgaaagccaagaggtgaaatacaatctgt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtccacacttcattgataaagatacagattgaaagccaagaggtgaaatacaatctgt 560

                                                                       
Query: 359 caataaaaaggaaggcaaaaagaacagacttagatttttgctttcaaataaagtagactt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caataaaaaggaaggcaaaaagaacagacttagatttttgctttcaaataaagtagactt 620

                                                                       
Query: 419 caaatgcaaattaatcaaaagaggtaaggtacatccctacacattaaaaaatagaatgat 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaatgcaaattaatcaaaagaggtaaggtacatccctacacattaaaaaatagaatgat 680

                   
Query: 479 ttgtcaag 486
           ||||||||
Sbjct: 681 ttgtcaag 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 888
Length adjustment: 10
Effective length of query: 476
Effective length of database: 878
Effective search space:   417928
Effective search space used:   417928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)