BAC Information

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BAC

Clone NameMSMg01-395L09
Chromosome1 (Build37)
Map Location 191,608,878 - 191,609,022
singlet/doubletsinglet
Overlap genePtpn14
Upstream geneUsh2a, Kctd3, Kcnk2, LOC100042424, LOC100039307, Cenpf
Downstream geneLOC100042438, Smyd2, Prox1, LOC100039394, EG666975
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395L09.T7 (MSMg01no395_l09.b1)MSMg01-395L09.TJ (MSMg01no395_l09.g1)
ACCAG496462AG496463
length7711,006
length of high quality
(start - end)
145 (170 - 314)---
definitionCHROMAT_FILE: MSMg01no395_l09.b1 PHD_FILE: MSMg01no395_l09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:38 2005CHROMAT_FILE: MSMg01no395_l09.g1 PHD_FILE: MSMg01no395_l09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATATCCTCTACATCTCCCATTTATACTTTTTTTCCCAAAGGATTCGCGG
AATTCATCATTTTCCACTTAAGGATATTCTGGTGTCCCATCTTCTCCCAC
CCCCCTTTGGGTGGATCCTTCCATATTTTCTGTCCCTATCAGGAGATCAG
ACTGGCGTGGCTTGGAAGTAAACATGCTACTCTGCCAACATAAAGTGGTT
TAGAAATGTTAATCTATTTTACCAAGCCAGCATTTCTAGCCATATGTATT
TTAAGCTACCATAAAACATGTACCTGCTGTGCTCAGGAATGTGCCGAGGG
CAAGTATCAAAGCCTACCGAGCGAGGCTGGGAGTGTGTTTTGGTGTGTTG
TAGGCTCATACCCTGACCACCTTCTTTATGCCTGGCTTTCTGTCACCTAC
CTTTTTTTTTCCCACCCCCCACAGCTCTTTTTTCCGCTGCACCCCTCCTG
CTTTTGTCTCCGCCTCCCATCTGTTTATCCACGAGTCTCCTAATTTCCTC
TTTACCCCCCTTTTTATCTTGTTGCTCTTATTTACTTATTTCTGCTCACA
CCCCTTTCCATCCACCCTTTTTCCCCTTATTTTTTTTTTTTTCTCCCCTC
TCTTTTCTTCTCCCTTTTTTTTTTTTCTACCCCCCCTCTCTGTAACCCTA
TCTCCCTTTTTATTCCTAATCCTTCCTTCCCCCTTTTTTACATTTTCCCC
CTCACACCTCTCTTATTTTTTTTACATAATTTTTTTCACCCCCCTTTTTA
TCTCTCTTTTTTCTCCCCCCC
CTCCTAATTCCCCGCTGCATCAGGCCCCGACCGCCCCCGCCTTCTACGTC
ACCACACTTTAGGGNNGACCACTATACGTATTTCCCCCGCCGTAATATTC
CCTCCCTTTGCAACGCTCATGTCGTCCTTCTTAGAAACAGGCAACTACCA
TGTCGAACATTAGGCCAATCGCACTTGTTGCTGCTTGGTCGAGCCTTCTA
CTTGAGTTCTATTCATGCCTCGCATGCGATTCGAGATCCTGATAGAGCAT
TAATGCAAAGTCTTACACCCATTCTTATGCTTTACTGTGTACCCGAGCGA
CAGGCTCTCCCTCTCTTAGTAAAGCCAGGCTTAGTTCTCTACCCCCATCC
ACTTCCCACGCTCAATGCTTCCCACAGAGTCCTTCTGGTATTCTTATGTT
CTCGCCAAGAACGAATCCTGAAGCTCCATCGAGCAGTCCTCACTACCATG
CCCACGAACCGACGCATACACCCAGCCTTGGCATCGCTACCCGCTTACAC
TACCNCCGCGGCCCCCGTAGTTTTCCTCTAGCTCCTTGATTCCCACGAAC
CTCTTCATCCATTTCCTCTGTCCCGCGTCCTTACCTCCTTTAACCCCCAC
ACCCCACTATTTACTCATTATCCTACCCTGTCTGATTGTTCGTTTTTGAC
TTGTAATTCTATCCTTCCTCTTGCCTCTCCCTATCTTTCCACGCCATTAT
CTTCCTATTATCCTATCCTAACTTCTTCCTGCTATTACCCGATCCCTCCC
TCACCTTTGTTATTTGTATCTTATTCCCCCCCCCAGCTCCGCTTCCCCCC
CTCTTGTTTTTCTTATTCCTCACCTATTTTTCCTCTTCTCTCTCTTCCCT
ACTGTCACTTCTCCTCTATCCTCATATCACTCTTACCCTCTTATTGTGAT
TTATGTCTCTTTCCCTCTTCATCTCTTCATCCGTCATTTCCTCCTCTGTC
TATCAACTATTGCTCCCCACGCTCTTTTTTACCCCTCTCTCTACTCTCCC
TCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_l09.b1 MSMg01no395_l09.b1 CHROMAT_FILE:
MSMg01no395_l09.b1 PHD_FILE: MSMg01no395_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:38 2005
         (145 letters)



>mm_chr1_191608678_191609222
          Length = 545

 Score =  281 bits (145), Expect = 2e-80
 Identities = 145/145 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacatgctactctgccaacataaagtggtttagaaatgttaatctattttaccaagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacatgctactctgccaacataaagtggtttagaaatgttaatctattttaccaagcca 260

                                                                       
Query: 61  gcatttctagccatatgtattttaagctaccataaaacatgtacctgctgtgctcaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatttctagccatatgtattttaagctaccataaaacatgtacctgctgtgctcaggaa 320

                                    
Query: 121 tgtgccgagggcaagtatcaaagcc 145
           |||||||||||||||||||||||||
Sbjct: 321 tgtgccgagggcaagtatcaaagcc 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 545
Length adjustment: 8
Effective length of query: 137
Effective length of database: 537
Effective search space:    73569
Effective search space used:    73569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)