BAC Information

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BAC

Clone NameMSMg01-395M07
Chromosome1 (Build37)
Map Location 142,814,316 - 142,814,642
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545399, EG545367, Cfh, Kcnt2
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395M07.T7 (MSMg01no395_m07.b1)MSMg01-395M07.TJ (MSMg01no395_m07.g1)
ACCAG496504AG496505
length779760
length of high quality
(start - end)
481 (72 - 552)246 (74 - 319)
definitionCHROMAT_FILE: MSMg01no395_m07.b1 PHD_FILE: MSMg01no395_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:43 2005CHROMAT_FILE: MSMg01no395_m07.g1 PHD_FILE: MSMg01no395_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:43 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACAATATTCTTAGAAGGTTTAAAACCTATCTGAACATATGCAAA
AAGTCAGAGTTTCATCTAATTGTGTGAAAAACTTTGAAAAATGAAGTGAA
ACTTCATATTCATATACAGAATTATTATTTGGCCTTTCAAGGAGGACTCA
GTGCCCAAGATAGTACTTAGCATGAGTTACCAAATTAAGACTTTCAGGAT
TCAAAAATTATCCTGTGTTCCAATGGCTTTTCTTACTTGGTCCTTGGGAA
GAAGTTGCCAATTATTCTATTTGTTTTTCAGATAAGTGGTCATTAGGACT
TGTGTTTTCTCATTAATATAGAATTTTTAAAGTAAGTTACTAATTAAGAA
ATATGTACTCCACATAAAGCAACGAATATACAATGATGACCAAAATAGGC
AGTCTTTAATGTTTTCACCATTTTGTAAGAAGGTGCATGCGGTAATTGTC
TTTGTGATTTTGTGTAGCAGATGAAGACCTTTGACATATGTCATGGTTTG
AATATTCTTGAACAGGGAGTAGCACCATCTGAAAAGCGCGGCCCTGGTTG
AATAACGATGAACTGTTTGGACTAGGTGCGTCCCGGTGGTCGGGGTTTTT
ACACCCGACCCTTTTTTTCTGGAAGTCTCTCTTCCATTATAATGCCACGC
AGGAAAACATTATTTCTCCCTTCTTCTCTGCGCCCCGATTTTTTGAAATT
TTTCTCTCCCCCCCTCTCATATGTCACGC
NNCCGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTACATGAGAAATTCTCTGTTTAATTCTGTACCCCATT
TTTATTGGGTTCATTGGTTTTTTTGGTAATTAACTTTTTTAGTTCTTTAT
AGATTTTAGATATTAGCCCTCTATTGAATATGGGGTTAGTAAAATTTTTC
CCCAGTCTGTAGGTTGCCGATTTGTCTTATCAACTATGTTCTTTGCCTTA
CTGAAGCTTTCCAGTTTCATGAGGATCCATTTATCAATTCTTGTTCTTAG
AGCATGGGCCATTAAAGTTTTGTTTTTGAAATTTCTCCCTGTGCCAATGA
GTTCAAAGCTCTTTTCCACTTTCTCTTCTACTAGATTCAGTGTATCTGGT
TTTATGTTGATGTCCCCGATCCACTCGGATTTGAGCTTTCTACAAGGTGA
GAAATATGAGTCTATTTTCATTCTTCTACTTACAGACTGCCCGTTAAATC
AATGCCCTTATATGAACATGCTCTCTTTTTTCCATTCGTCGCTTCTGGTG
CCTTCGTCAACCCCTTTTGCCCGTGTGTGCTTTCCCTTTTGGCCCCCCCC
TTTTACCCATTGTGGCACATGTTGGCTTTGTACCCTTTTCCCTTAGTTCT
TTTTCTTTTTTTCCTTTCCCATTTTGTGTTTCTCACCCCTTTTCTCCTTT
TTCCCTCTTTTCCTTCCTTTTCCCCTTTTTTCCCTTTTTTCCCTTTCCCT
TACATATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_m07.b1 MSMg01no395_m07.b1 CHROMAT_FILE:
MSMg01no395_m07.b1 PHD_FILE: MSMg01no395_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:43 2005
         (481 letters)



>mm_chr1_142814112_142814993
          Length = 882

 Score =  549 bits (284), Expect = e-160
 Identities = 317/330 (96%), Gaps = 7/330 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   taaaacctatctgaacatatgcaaaaagtcagagtttcatctaattgtgtg-aaaaactt 63
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 205 taaaacctatctgaacatatgcaaaaagtcagagtttcatctaatggtgtggaaaaactt 264

                                                                       
Query: 64  tgaaaaatgaagtgaaacttcatattcatatacagaattattatttggcctttcaaggag 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 265 tgaaaaatgaagtgaaacttcatattcatatacagaattattatttggccttgcaaggag 324

                                                                       
Query: 124 gactcagtgcccaagatagtacttagcatgagttaccaaattaagactttcaggattcaa 183
           |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 gactcagtgcccaagagagtacttagcatgagtgaccaaattaagactttcaggattcaa 384

                                                                       
Query: 184 aaattatcctgtgttccaatggcttttcttacttggtccttgggaagaagttgccaatta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaattatcctgtgttccaatggcttttcttacttggtccttgggaagaagttgccaatta 444

                                                                       
Query: 244 ttctatttg--tttt-tcagataagtggtcattaggacttgtgttttctcattaatatag 300
           |||||   |  | || |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 ttcta---gagtattctcagataagtggtcataaggacttgtgttttctcattaatatag 501

                                         
Query: 301 aatttttaaagtaagttactaattaagaaa 330
           ||||||||||||||||||||||||||||||
Sbjct: 502 aatttttaaagtaagttactaattaagaaa 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 882
Length adjustment: 10
Effective length of query: 471
Effective length of database: 872
Effective search space:   410712
Effective search space used:   410712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)