BAC Information

Click to search

BAC

Clone NameMSMg01-395P16
Chromosome1 (Build37)
Map Location 173,628,037 - 173,628,522
singlet/doubletsinglet
Overlap geneCd48
Upstream geneAtf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7
Downstream geneLOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395P16.T7 (MSMg01no395_p16.b1)MSMg01-395P16.TJ (MSMg01no395_p16.g1)
ACCAG496666AG496667
length785783
length of high quality
(start - end)		425 (68 - 492)487 (75 - 561)
definitionCHROMAT_FILE: MSMg01no395_p16.b1 PHD_FILE: MSMg01no395_p16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:59 2005CHROMAT_FILE: MSMg01no395_p16.g1 PHD_FILE: MSMg01no395_p16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTGCTTTGCCCGGGAAGTAGCCATGATGCTTAGTAAATGGAGTAAT
GACACTGATGCAAGAAAGGTGGCACAGGGAATGGAGCACCAAGGAGGTGG
CACAGGTAATGGAGCACCAGGGAGATGGCGCAGAGAATGGAGCACCAAGG
AAATGGCACAGATAATGGAGCACCAAGGAGATGGAGCACCATGGAGATGG
AGCAGAGAATGGAGCACCAGGGAAATGGTATAGGTAATGGAGCAACAGGG
GGATGGCACAGGAAATGGATCTCCAGGGAGATGGAGCACCAGGGAAGTGT
GTACTGACTATGCACTGAATCTAGGAACCATTGTAACAGATTCTTAGACC
TTAACACAACTAAAACCATGTTAGATGCTCCAAGACCCCATCAGGACCAC
ATAGGCCCCTACACCTGCAAAAATGAGAACAAAGACTTACATCATAGTTC
ATAGTTCTGGGAAAGTCCCTAAATGAACTAACCTTACTTTTTGGCTTCTG
TAGCTATGCCTATTGCTACCTGTTTTTGGCAATTGAAGTGTGTTAACCGG
GATTACTTTTTCTTGTGCCTAAAAGCCCATAACATTAATGTTCATGCCTA
CATGATTTTGTTCTGCCTGGTTGACTCCCTGTGTATCCCCTCATCCCCTG
ATTAAAAGGTTTTCCTTTTGGCCTATAGGAATCCCGGGTGGTTCTCTCCG
AAAATTTCCCCCTCTCCCTTCTTTTTTCCATTTAN

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGAGTTCAGATTCAGAGAGAATCCT
GAAGGGCCTCAACCTATACACAGAGAAACCTGAAGCTCGTCACACTGTCA
TTATAGAATGCTTAAATCTATAAACCTCCCATCTTTGTCTCCATTGTGAA
TCGGAAGCTCATAAAGAAATATGGATTTGTTTAGTTTGCCCAGATGATGT
GATGTCTTTTTCTATGACTCCCTAAGTACTTAATAAATTTACTGTTTGCT
TCATTCTGGTTCACCATGATATTCTTTTCCAAGGGGTAGCCAAGGATACA
GCTTTACTTGAACAGAAATCTCCAAGGGGGAAAGTGAACTCTTTAGGTCA
CTGGTTTAGTTATCACCCACCCCAAACACACACTGTGCCTATGGCCATCT
TACAAATTGTAGAAAGCCATGAGACAAAGGCTAGAACACATAAATTTAAC
TGCAGAACAGGCTAACTGGTCTTTTCCTGAGGAAAATGGAAATTATTTCT
GAAACTATTTTTAATTCTGGACCAAGGAGAATATAGTATTAAATCCGCCT
ATTTTGAAAGAGAAAAAAGATGTACAGTTTCCACTTATTCTTGGCCTCCT
AAAATTCTTTGTTCTTGGCCCCATCCGGGGAAGAAAGAAAAATACCAACA
ACTTTCTTGTTCCTTTGGGGAAATCCATTTGTGTAAATTGGGACCTTTGA
GATTCCCCCAAAAAAAATTCCGGGTGGAACAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_p16.g1 MSMg01no395_p16.g1 CHROMAT_FILE:
MSMg01no395_p16.g1 PHD_FILE: MSMg01no395_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:59 2005
         (487 letters)



>mm_chr1_173627837_173628722
          Length = 886

 Score =  934 bits (483), Expect = 0.0
 Identities = 486/487 (99%), Gaps = 1/487 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggagttcagattcagagagaatcctgaagggcctcaacctatacacagagaaacctgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tggagttcagattcagagagaatcctgaagggcctcaacctatacacagagaaacctgaa 627

                                                                       
Query: 61  gctcgtcacactgtcattatagaatgcttaaatctataaacctcccatctttgtctccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gctcgtcacactgtcattatagaatgcttaaatctataaacctcccatctttgtctccat 567

                                                                       
Query: 121 tgtgaatcggaagctcataaagaaatatggatttgtttagtttgcccagatgatgtgatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgtgaatcggaagctcataaagaaatatggatttgtttagtttgcccagatgatgtgatg 507

                                                                       
Query: 181 tctttttctatgactccctaagtacttaataaatttactgtttgcttcattctggttcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tctttttctatgactccctaagtacttaataaatttactgtttgcttcattctggttcac 447

                                                                       
Query: 241 catgatattcttttccaaggggtagccaaggatacagctttacttgaacagaaatctcca 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 catga-attcttttccaaggggtagccaaggatacagctttacttgaacagaaatctcca 388

                                                                       
Query: 301 agggggaaagtgaactctttaggtcactggtttagttatcacccaccccaaacacacact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agggggaaagtgaactctttaggtcactggtttagttatcacccaccccaaacacacact 328

                                                                       
Query: 361 gtgcctatggccatcttacaaattgtagaaagccatgagacaaaggctagaacacataaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtgcctatggccatcttacaaattgtagaaagccatgagacaaaggctagaacacataaa 268

                                                                       
Query: 421 tttaactgcagaacaggctaactggtcttttcctgaggaaaatggaaattatttctgaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tttaactgcagaacaggctaactggtcttttcctgaggaaaatggaaattatttctgaaa 208

                  
Query: 481 ctatttt 487
           |||||||
Sbjct: 207 ctatttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 886
Length adjustment: 10
Effective length of query: 477
Effective length of database: 876
Effective search space:   417852
Effective search space used:   417852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |