XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
TTATTTTGTCCTTTCTTCAGAATCATTTTCTCCTTTTTCTATGAAAAAAT
TACAAGGGGATTTTGCGAGTCACTGTATTGCACCTTGCTTTGTTCTATAC
AGACATTTTAATGATGGTTCCAGTCTAAGAACAAAGTATATATTTCCATT
TATTTGTATATATTTCAGATTTAATCAGTGTGCTACAATTTTCACTTCAG
AAAAATATCATAGCTTTTACCCAGCTGTTAAGAAGTCTGTTGTATGATGA
ACATCTTCCTGGCATACTGCCTTAAGTTTTAGGTCCAACATCTGTGCCAA
AAAAATAGAACCTTAAGTTTTGTTTCTAAATAAAATCTAAATTATATATA
TATATGCTGCTTAACACACACTGTGACACTGAATAAGTAGAAACAATGTA
AATATCTAACAAAATGTTCAGCTTCATGTGTTTTATAATGAGATACTGTG
AATAGAATATTAATATCGATATTATTTGTATAACAGGTAAACAATTTATC
TTATATAATAGTGCAATACCTCCTATAAGCCAGATGCATTTTTTACATTT
ATAAATAGGCAGTGTCACTTACACATCTTTGTGGTGTTCCCCATGTGTGG
CCTGTGCTTTCATATTGGGTTAAAATGAAGATTATTGGGTTCCTTGCCAA
TGGACTGGATATTGGCAAAAAAATTTTTCAAGGCCCTTTTTATAAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCAGCTGAGGAATATCAAATGGCCAAGAAGCA
CCTAAAGAAATGATTAAAATCCTTAGGATCAGGGAAATGCAAATCAAAAC
AACATTGAGATTCCACCTTATACAAGTCAGAACGGCTAAGATCAAAAACT
CAGTTGACAGCAGATGCTGATGAGGATGTGGAGAAAGAGGAGCACTCCTC
CATTCTTGGTGGAAATGTATGCTGGTGCATCCACTCTGGAAATCAGTTTG
GTGGTTCCTCAGAAAATTGGACATAGTATTACCTGAGGACCCAGTTATAC
TACTCCTGGGCATATACCCAGAAGATGCTCAAACATGTAAAAAGGACTCA
TGCTCCACTATGTTCATAGCAGGAGCTGGAAAGAACCTAGATGTCCTTCA
ATAGATAATGGATACAAAAAATGTGGTACATTCACACAATGTTGTACTAT
CAGCTATTAAAAACAATGAATTCATGACATTTTTACTCCCCAGATATAAC
TATAACCACATTACTCCCTGAGTGAGATATACCAATTCCCAAAGAAATCT
CCTTGTTCTGGATTTCCGTGGACATTTGGAAAAATGCTCCCATTTCTTCC
CTATCACCCTAATTTCATTTCCTTTTACCCCTTGTATACTTTCGGAAAAA
TGGTATACCTCACTTGCTGTGATGGTTTCGGTACCCTTCTTTAAAACGTG
TAAAA

Query= MSMg01no396_d05.b1 MSMg01no396_d05.b1 CHROMAT_FILE:
MSMg01no396_d05.b1 PHD_FILE: MSMg01no396_d05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:16 2005
         (524 letters)



>mm_chr1_50481297_50482220
          Length = 924

 Score =  982 bits (508), Expect = 0.0
 Identities = 517/520 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagttattttgtcctttcttcagaatcattttctcctttttctatgaaaaaatta 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagttattttgtgctttcttcagaatcattttctcctttttctatgaaaaaatta 264

                                                                       
Query: 65  caaggggattttgcgagtcactgtattgcaccttgctttgttctatacagacattttaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaggggattttgcgagtcactgtattgcaccttgctttgttctatacagacattttaat 324

                                                                       
Query: 125 gatggttccagtctaagaacaaagtatatatttccatttatttgtatatatttcagattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatggttccagtctaagaacaaagtatatatttccatttatttgtatatatttcagattt 384

                                                                       
Query: 185 aatcagtgtgctacaattttcacttcagaaaaatatcatagcttttacccagctgttaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatcagtgtgctacaattttcacttcagaaaaatatcatagcttttacccagctgttaag 444

                                                                       
Query: 245 aagtctgttgtatgatgaacatcttcctggcatactgccttaagttttaggtccaacatc 304
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 445 aagtctgttgtatgatgaacatcttcctggcatactgccttaagctttaggtccaacatc 504

                                                                       
Query: 305 tgtgccaaaaaaatagaaccttaagttttgtttctaaataaaatctaaattatatatata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtgccaaaaaaatagaaccttaagttttgtttctaaataaaatctaaattatatatata 564

                                                                       
Query: 365 tatgctgcttaacacacactgtgacactgaataagtagaaacaatgtaaatatctaacaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatgctgcttaacacacactgtgacactgaataagtagaaacaatgtaaatatctaacaa 624

                                                                       
Query: 425 aatgttcagcttcatgtgttttataatgagatactgtgaatagaatattaatatcgatat 484
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 625 aatgttcagcttcatgtgttttataatgagatactgtgaatagaacattaatatcgatat 684

                                                   
Query: 485 tatttgtataacaggtaaacaatttatcttatataatagt 524
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tatttgtataacaggtaaacaatttatcttatataatagt 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)