BAC Information

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BAC

Clone NameMSMg01-396I14
Chromosome1 (Build37)
Map Location 97,726,577 - 97,726,820
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
Downstream geneGm1833, Slco4c1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396I14.T7 (MSMg01no396_i14.b1)MSMg01-396I14.TJ (MSMg01no396_i14.g1)
ACCAG497091AG497092
length749762
length of high quality
(start - end)
244 (62 - 305)269 (318 - 586)
definitionCHROMAT_FILE: MSMg01no396_i14.b1 PHD_FILE: MSMg01no396_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:41 2005CHROMAT_FILE: MSMg01no396_i14.g1 PHD_FILE: MSMg01no396_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGCGCTAAAAGAATACTATATTCAGAAACCCGCNGGAATCCAGGGAAAT
TCCCCCACACAGGCAGCCAATCAGAAGCTGCCAGGGGTCTGCCTCCTGGC
CAGAGACAAGGTTGAGACAAGAATAGGTAATCAGCATCAGTTCCAAAACG
ACCTCACAATTCTCCAGAACCTTGACCAATCCTAAGGCACCTATATCCCT
GGAGATACAGCCACCCAATCAAGGGGAAGGAACATAAAAGTCACCCACCC
TATTCTAATAGTCTTCAAAGCTACCAAGCACACACAGCTGCCTTCCATCT
TGATAAAGGTAGAGCCCTACTTGCTGGATTTCTGCAGAATGAATGCTCTT
GGAGTTTGCATATTATTTGAGTATGGAGTATCATTCTTCATTGAATTACG
GACCCTTACACCAGAAAGAATACAATGATAGTTGCTAAGATACAATGACA
TTTGCAAGTTTTACAGGGTATACAAGATTAGTGTCTAAGAGTATTTATCA
TGATTAGTGTCTAAGAGTATCATGTCAAACTTCTATATGTATGCCTCACT
GCCTTCTAGGGAATGCAGAAAAACACAAGTGACATGAGTCCGTCACTGCC
TCAGGAAGTGCCTTGGGTTCTCAGGAGCCATGTACTCCAACCTAAAATAC
CTTGATACCTGCCTTTCCAGGAAGTTAGGCCAGGCTTATTTCTTGATTAT
CCACAAAATCCTTTACCCGATTAAGAGATAATAGGTAGAGATCCTACTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTTAGTGCACTCTAAGGCATCTCTTTCTACCCACAGA
AAAGTGTAGCTCTTATCCCTCATCAAAGAAGAATATTACAGAAAACCACC
AGTTGGAGTTTTCTATATCACAGATACAGATCTCTGATATAACAGAAACC
AACAACTATTGCATCTAAGGCTTAATAAACCCAAGGAAGAGGGAACAGAA
AGAATATAAGAGTCAGAGGAACAAAGAGACAGTCATGATTTTGTCTCCTA
GAAATCAAAGTTATGCTACACTGTGACACTCCAACAATGTAATTAACTCT
GTAAGACCTGAACACAGACATACATCAGCATGGAAAGTAGAAATCTCACT
GGGTCTCTCCCATAAAAAAAGATTACACACGACTTAAGACTGCTGAGAAA
ATTAGGCTCACAAGGATGAGCCCCCTTATTGGTTTTCCAGTACAAAGTGG
TCAGCCCTGAAAACATATGCATGCAAGCAACAAAAACAGACTCACAAGGT
TGTGCATATATTTGTAACAACAGTAAAAAGAGGCCATAGATTTGAAAGGG
ACTGGGGAGGCATGGAAAGAGGTGGCAGGAGAGAACATTGCTGGGCTTCT
TGGGTGGAAAGAAGAAATGGAAGAGATGGAATTACATTTTAATTTCCAAA
AATTAAAGCCGAGTGTGGGAGCCCATGGTTTTTATTCCCCCGAATTTGTG
GAGGTAAAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_i14.b1 MSMg01no396_i14.b1 CHROMAT_FILE:
MSMg01no396_i14.b1 PHD_FILE: MSMg01no396_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:41 2005
         (244 letters)



>mm_chr1_97726377_97727020
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcagccaatcagaagctgccaggggtctgcctcctggccagagacaaggttgagacaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggcagccaatcagaagctgccaggggtctgcctcctggccagagacaaggttgagacaag 385

                                                                       
Query: 61  aataggtaatcagcatcagttccaaaacgacctcacaattctccagaaccttgaccaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aataggtaatcagcatcagttccaaaacgacctcacaattctccagaaccttgaccaatc 325

                                                                       
Query: 121 ctaaggcacctatatccctggagatacagccacccaatcaaggggaaggaacataaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 ctaaggcacctatatccctggagatacagccacccaatcaaggtgaaggaacataaaagt 265

                                                                       
Query: 181 cacccaccctattctaatagtcttcaaagctaccaagcacacacagctgccttccatctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cacccaccctattctaatagtcttcaaagctaccaagcacacacagctgccttccatctt 205

               
Query: 241 gata 244
           ||||
Sbjct: 204 gata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)