XXXXXXXXXXXXXXXXXXXXXXXTTCGAGACGATCCGCGGAATTCACTCT
TTTCCATGAAATGTGCAGCAAAGATGGTAGATTGCACATGCATGATGAGA
TATACATGATACTGGAAAATTGTTGTTAATGCTCACCTTGCTGGAGTCAC
CTTGAACTGCACACATGGACCTACTGGTAAATTTAAAAGGACACATAAAT
AAATTCTATCTCTGCATAGTAAGGTCAACTTCTTGATAAATTCTATATGG
TGACTTGATCCTAAAGGCATCTGTTTGGGAAGGTGAATATTTTGTGCCCT
TGAGCATCTTTATTCTACTACTATACTAGACTGGTCCCTTTAGCTAAGTT
CATTGCACAGAGAGATGGGTAGAGATATGGCTTTATATATGAGAGTATGC
TTGCATGCATATATAGATCTCATTATGTAGTACAGCCTTAAATAAATTAA
AAACTATCATCCTGCCTAGTTGGTTTAGAATGGAATGTAGACCATAAATA
CTTAAATAATGAGCTCAATTCAGGCTAATACAAAATAAGTTTTGAATGGA
CATGTACTAAATGTTAAGTGCTGATCGTATTTGATATGCATAATTATAAA
CAAAATTGTAGATTTTTGTATATTTAATTAATAAATAAATTTTATTTACC
ATGTTACTACTGGCATTATTTTTGGGATAATAATTAAGTGGTTGAAATAA
TTCCAAATGCGCCTTCACCTTAAATGATTTATACAAAAAGGTTCTCCCTC
CCAAAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATTGCTATAGGAAGGGACATTTTGAACAGTCACTG
ACACCCAAGGCAAGAACAACAATGAATAAATAAGATTTCCTGAAAATCAA
TAGCTTCTTCACAACAAATGACAACATCATTTGGACAATGCAACAGGATA
CAGAACGAAAAAAAAAAAAAGAGTTTTATCGGCTACATATCCTATGAAGG
TCTAAGATCCTAAATATGTAAACAACTCAAGAACCTAGACATCAAGAAGG
TCAATGGAGGATCTAGGGAAAGTACTCAAGGAGCTGAAGGGATCTGCAAT
CCTATAGGTGCAACAACAATATGAATCAGAAGATGGCCTAGTCAGCCATC
AGTGGAAAGAGAGGCCCATTGGTTGTGCAAACTTTATATGACTCAGTACA
GGGGAACGCCAGGGCCAAGAATTGGGAGTGAGTGGGTAAGGGGAGTGTTC
TTTCTTTCCCCCTCTTCCCTTTTCTTCTTCCCTTCTTCCCCCCTTTCCCT
CCTTTTCTTTCTTTCCCTCCTTTTTTCCTTTTCCTTTCCTTTCCTTTTCT
TCCTCCTTTTCCCTTTTCTTCCTTTTTTCCCCCCCTTTCCCCTTTTCTTT
CCTCTTTTATCCCTCCCTTTTTTCTTCCTTTCTATTTTACCCTTTTTTCC
TTTCTTTCTCTTTTCACCCTTTTTCCTTTTTTCCTTCCCTTTTTTTCATA
TTCTATCTTTTTCAN

Query= MSMg01no396_n09.b1 MSMg01no396_n09.b1 CHROMAT_FILE:
MSMg01no396_n09.b1 PHD_FILE: MSMg01no396_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:04 2005
         (514 letters)



>mm_chr1_110810060_110810971
          Length = 912

 Score =  787 bits (407), Expect = 0.0
 Identities = 489/523 (93%), Gaps = 14/523 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcagcaaagatggtagattgcacatgcatgatgagatatacatgatactggaaaattgtt 60
           |||||||||||| |||| |||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 201 gcagcaaagatgctagaatgcacatgcatgatgatatatacatgatattggaaaattgtt 260

                                                                       
Query: 61  gttaatgctcaccttgctggagtcaccttgaactgcacacatggacctactggtaaattt 120
              ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 ---aatgctcaccttgctggagtcacctcgaactgcacacatggacctactggtaaattt 317

                                                                       
Query: 121 aaaaggacacataaataaattctatctctgcatagtaaggtcaacttcttgataaattct 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||
Sbjct: 318 aaaaggacacataaataaattctatctctgcataataaggtcaacttcttgataaaagct 377

                                                                       
Query: 181 atatggtgacttgatcctaaaggcatctgtttgggaaggtgaatattttgtgcccttgag 240
           |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 378 atatggtgacttgatcctcaaggcatctgtttgggaaggtgaatcttttgtgcccttgag 437

                                                                       
Query: 241 catctt-tattctactactatactagactggtccctttagctaagttcattgcacagaga 299
           || ||  ||||||||| |||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 438 cacctgatattctactgctatactagactggtcactttagctaagttcattggacagaga 497

                                                                       
Query: 300 gatgggtagagatatggctttatatatgagagtatgcttgcatgcatatatagatctcat 359
           ||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||
Sbjct: 498 gatgggtagagatatggctttatatatgagaatatgcttgtatgtatatatagatctcat 557

                                                                       
Query: 360 tatgtagtacagccttaaataaattaaaaactatcatcctgcctagttggtttaga---- 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 558 tatgtagtacagccttaaataaattaaaaactatcatcctgcctagttggtttagagccc 617

                                                                       
Query: 416 a------tggaatgtagaccataaatacttaaataatgagctcaattcaggctaatacaa 469
           |      |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 618 aagttactggaatgtagaccataaatacttaaataatgagctcaattcaggctaatagaa 677

                                                      
Query: 470 aataagttttgaatggacatgtactaaatgttaagtgctgatc 512
           ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 678 aataagttttgaatggacatgtactaaatgttatgtgctgatc 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 912
Length adjustment: 10
Effective length of query: 504
Effective length of database: 902
Effective search space:   454608
Effective search space used:   454608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)