Query= MSMg01no396_p18.b1 MSMg01no396_p18.b1 CHROMAT_FILE:
MSMg01no396_p18.b1 PHD_FILE: MSMg01no396_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:15 2005
(271 letters)
>mm_chr1_71391341_71392011
Length = 671
Score = 480 bits (248), Expect = e-140
Identities = 263/268 (98%), Gaps = 1/268 (0%)
Strand = Plus / Plus
Query: 5 gaattcaatgttttccaattaaagactgatcagctttaagatgttatgcactggccacat 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgttttctaattaaagactgatcagctttaagatgttatgcactggccacat 264
Query: 65 aaagctgttgaaacctaacacattggcattcccctttggagatttatttttaattatttg 124
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaagctgttgaaacctaacacagtggcattcccctttggagatttatttttaattatttg 324
Query: 125 tgacagagagtattatgtgcacattagtgaaggtgtccctggagac-agaggaaggtgtt 183
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 tgacagagagtattatgtgcacattagtgaaggtgtccctggagaccagaggaaggtgtt 384
Query: 184 ggatcctctggaattggagtcgtgggcgttgtgagctgcctgatggggaactgggacttg 243
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 385 ggatcctctggaattggagtcgtaggcgttgtgaactgcctgatggggaactgggacttg 444
Query: 244 aactcaggccttctgcaagagaattatg 271
||||||||||||||||||||||||||||
Sbjct: 445 aactcaggccttctgcaagagaattatg 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space: 173444
Effective search space used: 173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no396_p18.g1 MSMg01no396_p18.g1 CHROMAT_FILE:
MSMg01no396_p18.g1 PHD_FILE: MSMg01no396_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:15 2005
(173 letters)
>mm_chr1_71529515_71530088
Length = 574
Score = 300 bits (155), Expect = 4e-86
Identities = 161/163 (98%), Gaps = 1/163 (0%)
Strand = Plus / Minus
Query: 1 taagatggtaagccgtgtccttcattctgtttttgaaaatatttgggtcagtgcttacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 taagatggtaagccgtgtccttcattctgtttttgaaaatatttgggtcagtgcttacaa 278
Query: 61 agttagcaagacaaacaactctctcttcataggctaggactggctcatttaaaatgtctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agttagcaagacaaacaactctctcttcataggctaggactggctcatttaaaatgtctt 218
Query: 121 attacatc-acttattcgtgtgtgtgtgtgtgtgtgtgtgtgt 162
|||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 217 attacatctatttattcgtgtgtgtgtgtgtgtgtgtgtgtgt 175
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 574
Length adjustment: 8
Effective length of query: 165
Effective length of database: 566
Effective search space: 93390
Effective search space used: 93390
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
