BAC Information

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BAC

Clone NameMSMg01-396P21
Chromosome1 (Build37)
Map Location 142,988,470 - 143,153,585
singlet/doubletdoublet
Overlap geneEG226472
Upstream geneCfh, Kcnt2
Downstream geneLOC639376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396P21.T7 (MSMg01no396_p21.b1)MSMg01-396P21.TJ (MSMg01no396_p21.g1)
ACCAG497436AG497437
length786763
length of high quality
(start - end)		474 (35 - 508)463 (64 - 526)
definitionCHROMAT_FILE: MSMg01no396_p21.b1 PHD_FILE: MSMg01no396_p21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:16 2005CHROMAT_FILE: MSMg01no396_p21.g1 PHD_FILE: MSMg01no396_p21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(142,988,470 - 142,988,939)(143,153,123 - 143,153,585)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGCTTT
AGTATCAACTGAATTTCACTTAGTAACAGCATCTGGAAAAATAACGGGAG
CCAGTTTGAAGGTGTCTCCTTAGCTCGTAAAGCATTGGTGTCACCTTCTC
TGGAGGCACTGAGCTCACTGATTGACACACTCTAGATAGTCTGCACAAAA
TAAATGAAAATAGTCAGGCAACCTTTGGAATTTGTGAATGCATCTGAACT
GGTTAAAGGAAGCAGAGTGGTAACCTGAAATGTAGATTACATTTACAAAA
GGAACGAGTTCCAGTCAATTCTTGGAAATCTAGGAACTACATTTAATGTG
AGAACACTGCCAAGTAGAAAACATGCCAAACTTTATTTCATACATAAATA
ATTTTTATATTTAATTATACACTCTATGCAAATGACTTTAATAAAATTGA
AAGTGATTATTTACTTATGTAGAGATTTTCTGCATCATTTCTTGCTTACT
TTATTAATTTACTTACTCAATCCTTAAAAAAATGTTTGATAGAAAAAATA
GCATTCAGCTTGATAGCATAACTATTTACCCAACAACAGTCTGTTGAATC
CTCTGAAAATTGAACTCCTATTTAGAAATTTGACCAAAAATGTAGGCCAA
AAACTGATCCCCTTTTTATTAAAAAAGGCCTCTGTCCCGAAAATTGTTGG
TATCCCCACAATTTTTTCGCCTTTATAAAAAAAGTTTGGTCTCTTTCAAA
AAAAGGCCTTTTTCGTGTAAAAAACAAAAAGTTTGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAAACTGGGCCTGGAATTTTTCAATTTGCCTTACTTAA
TTGATGGGTCACACAAAATCACCCAGAGCAATGCCATCCTGCGCTATACT
GCCCGAAAGAACAACCTGTGTGGGGAGACAGAAGAGAAGAGTCGTGTGGA
AATTCTGAAGAACCAGGTTATGGATGTCTCCAGTCAACTGGGTAGAGTCT
GTTACAGCCCAGACTTTGAGAAACTGAAGGCAGAATACTTGGTGCAGCTC
TCCTCACAGTTCCTGGGCAAGCGGACATGGTTTGTTAGTGAAAAGATTAC
TTTCGTAGATTTCCTTGCTTACGATATCCTGGACAGGCACCTTATATTCG
AACACACGTGCCTGGATGCCTTCCTAAACCTGAAGGACTTTGTGGCCTGC
GTTGAGGAACTGAAGAAGATGTCTGATTACATGAAGACCAGCCACTTCCT
CTGAACACCTCTGTAAACAAAGGTGGCCACTTGGGGCCTTGGCTGGGCAG
GAAGTGGAAACTGGGGATTCTGGGAACAGTTGAACTTTCTGTAGCCCTGG
TGGTCCCGAAAGAACCTAGTGGGTAAACCCCCGTTAGTACCCCCAGAATT
ACCAATAGAACCCACACCCTTCCTTTTGACTTCCAGAAACTTTCGCAGCC
TTTTGTGAAAAACACAGGGGGGCCAGTTGGTCCAAACCCCGGGTATCCAA
TAAAAACCCCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_p21.b1 MSMg01no396_p21.b1 CHROMAT_FILE:
MSMg01no396_p21.b1 PHD_FILE: MSMg01no396_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:16 2005
         (474 letters)



>mm_chr1_142988266_142989139
          Length = 874

 Score =  855 bits (442), Expect = 0.0
 Identities = 463/470 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagctttagtatcaactgaatttcacttagtaacagcatctggaaaaataacggg 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagctttagtataaactgaatttcacttagtaacagcatctggaaaaataacggg 264

                                                                       
Query: 65  agccagtttgaaggtgtctccttagctcgtaaagcattggtgtcaccttctctggaggca 124
           |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 agccagttagaaggtgtctcgttagcttgtaaagcattggtgtcaccttctctggaggca 324

                                                                       
Query: 125 ctgagctcactgattgacacactctagatagtctgcacaaaataaatgaaaatagtcagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 ctgagctcactgattgacacactctagatagtctgcacaaaataaatgaaaatagccagg 384

                                                                       
Query: 185 caacctttggaatttgtgaatgcatctgaactggttaaaggaagcagagtggtaacctga 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 caacctttggaatttgtgaatgcatctgaactgggtaaaggaagcagagtggtaacctga 444

                                                                       
Query: 245 aatgtagattacatttacaaaaggaacgagttccagtcaattcttggaaatctaggaact 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 aatgtagattacatttacaaaaggaacgagttccagtaaattcttggaaatctaggaact 504

                                                                       
Query: 305 acatttaatgtgagaacactgccaagtagaaaacatgccaaactttatttcatacataaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acatttaatgtgagaacactgccaagtagaaaacatgccaaactttatttcatacataaa 564

                                                                       
Query: 365 taatttttatatttaattatacactctatgcaaatgactttaataaaattgaaagtgatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taatttttatatttaattatacactctatgcaaatgactttaataaaattgaaagtgatt 624

                                                             
Query: 425 atttacttatgtagagattttctgcatcatttcttgcttactttattaat 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atttacttatgtagagattttctgcatcatttcttgcttactttattaat 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no396_p21.g1 MSMg01no396_p21.g1 CHROMAT_FILE:
MSMg01no396_p21.g1 PHD_FILE: MSMg01no396_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:16 2005
         (463 letters)



>mm_chr1_143152923_143153785
          Length = 863

 Score =  872 bits (451), Expect = 0.0
 Identities = 460/463 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaactgggcctggaatttttcaatttgccttacttaattgatgggtcacacaaaatcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aaactgggcctggaatttttcaatttgccttacttaattgatgggtcacacaaaatcacc 604

                                                                       
Query: 61  cagagcaatgccatcctgcgctatactgcccgaaagaacaacctgtgtggggagacagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 cagagcaatgccatcctgcgctatactgcccgaaagaacaacctgtgtggggagacagaa 544

                                                                       
Query: 121 gagaagagtcgtgtggaaattctgaagaaccaggttatggatgtctccagtcaactgggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gagaagagtcgtgtggaaattctgaagaaccaggttatggatgtctccagtcaactgggt 484

                                                                       
Query: 181 agagtctgttacagcccagactttgagaaactgaaggcagaatacttggtgcagctctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 agagtctgttacagcccagactttgagaaactgaaggcagaatacttggtgcagctctcc 424

                                                                       
Query: 241 tcacagttcctgggcaagcggacatggtttgttagtgaaaagattactttcgtagatttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tcacagttcctgggcaagcggacatggtttgttagtgaaaagattactttcgtagatttc 364

                                                                       
Query: 301 cttgcttacgatatcctggacaggcaccttatattcgaacacacgtgcctggatgccttc 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 363 cttgcttacgatatcctggacaggcaccttatattcgaacccacgtgcctggatgccttc 304

                                                                       
Query: 361 ctaaacctgaaggactttgtggcctgcgttgaggaactgaagaagatgtctgattacatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctaaacctgaaggactttgtggcctgcgttgaggaactgaagaagatgtctgattacatg 244

                                                      
Query: 421 aagaccagccacttcctctgaacacctctgtaaacaaaggtgg 463
           ||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 243 aagaccagctacttcctctgaacacccctgtaaacaaaggtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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