BAC Information

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BAC

Clone NameMSMg01-397G19
Chromosome1 (Build37)
Map Location 169,672,843 - 169,673,090
singlet/doubletsinglet
Overlap geneLmx1a
Upstream geneLOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg
Downstream geneLOC100039879, Pbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397G19.T7 (MSMg01no397_g19.b1)MSMg01-397G19.TJ (MSMg01no397_g19.g1)
ACCAG497768AG497769
length827806
length of high quality
(start - end)
249 (69 - 317)344 (67 - 410)
definitionCHROMAT_FILE: MSMg01no397_g19.b1 PHD_FILE: MSMg01no397_g19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:51 2005CHROMAT_FILE: MSMg01no397_g19.g1 PHD_FILE: MSMg01no397_g19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTGCGTTCGCTATACGATCACTATATTTCGACAACCCGCGGAATTCT
CCTGCCCTTTCCCCGGCGGAGGAGTTCAGAGGGAAGAGGAAGGGATGCGA
TAGATGAAGTCAGAGGTCAGGAAGAGTCAATTGCCACGTCCTACACACCG
CAACTAGTAGAGTTGGTAAAATAATCCTTTCTCTGAGCATTTCTTGGTTG
CCATGTTATCAGCTCTACGTGTAAGCGCTCCAGGAAAGAAATGTTTTACC
GTCCCTGAAACTGAATTATTAAATGGGGATTAATGTGGTGTTGACTTTTC
TTCATGGCTGATTTGCTTTATATTTTGGGTTTAAAGCATCTTTTGCTAAA
CCTTCTGGATTTTACCACCCAGCCCTTGGATGACTCATTTTTTATAGATT
TCTTGTTGTACCCCCCCACTAAATCTTAGACGACCCTCTTTTTTGCTCTT
CCTTTCTCCTTTTTTCTTCGCCCTGGATCTCTTCCCTTTTATCATATACC
CTTCCCTACCCCCCCCGCATTTATCGTTTCTCTCTGGTCTAATCTTCTCC
CCCCCCTCTTCCCCTCTTTCTTTCTTTACCCCTCCCCTCTATCTTATTGC
TTCCCGTGCTCTCCCTCCTTCCTCTTTCCTCTCCTTTCCCGTCTACTTTT
TTTCCCCTCTTCCTCCTTTCTCTCCTTTACCATTCTCCTTTTTCTCTCTT
TTTCGCTTCCCCCTTTTTTCCCCTTATTCTTCTCCTTCTTCTTCCCTTTT
CCTTTCTCTTGATCTCCTTTCCCCTTTTTCCCCACTCTCTCTTCCATTTT
TACTTTCCTTGCACTCCTTCTATTCTA
GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATGCAGTTGAATCCTTCTCAACAGTCTGTTTTAC
GGGAACCTTTATTACCGTGACCCGCAGTTCTGGTTCCGGAATGAGGGATC
TTCATTGCGCCGGTCCCAAGTTTTCTTGTATTTTCTCGTCCTGGATTTCA
GCACCAACTCTTATACGCGTTCTCACGACCGGCCAGGAAGAACACAACAA
ACCAGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCCAG
GAGCGCAAGCCCCAAGCCTTCTAAAACGAAAGGTCCCCCGCTTACATCTT
TAGGAGCCAGAGCGCCAGCGCGCCAGAGCGCCAGAGCGCATAGCGCAAAA
GCGCAAGCCAGACACAGAATGGCGGATACCCCGTCCCCTTTTAAGGAGAA
TTATCTTTCGCCTAGGACGCATCACTCCCTGATTGGCTGCATGCCCTGGG
CGAATATAGGCAGAGCAATGTTTGGGTTAAAATACTTTGTGACTTCCCAA
ATCTTTTGTCTACCCCTCTAATAATCGATAGTTCGTCCCCTTCTTTGGTC
TGTATATTTTGCGGCTGGTCTCTCTCTTACTTTTATTTTATTTTTTCGTC
CCTCCCATTTCCCTTTTTTTTTTACCATCCTCTATATTTCTCTTTCCTCT
TTTTTTCTTCGCGTTTCCCTTCCCCCTTTTTTTTAATATCTCACTTCGCC
CCGCGCCTTTCCATTTTTATTTACCCCCTCCTCCGTATCTATTATTATTT
CTATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_g19.b1 MSMg01no397_g19.b1 CHROMAT_FILE:
MSMg01no397_g19.b1 PHD_FILE: MSMg01no397_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:51 2005
         (249 letters)



>mm_chr1_169672643_169673291
          Length = 649

 Score =  480 bits (248), Expect = e-140
 Identities = 248/248 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggagttcagagggaagaggaagggatgcgatagatgaagtcagaggtcaggaagagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaggagttcagagggaagaggaagggatgcgatagatgaagtcagaggtcaggaagagtc 260

                                                                       
Query: 61  aattgccacgtcctacacaccgcaactagtagagttggtaaaataatcctttctctgagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattgccacgtcctacacaccgcaactagtagagttggtaaaataatcctttctctgagc 320

                                                                       
Query: 121 atttcttggttgccatgttatcagctctacgtgtaagcgctccaggaaagaaatgtttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttcttggttgccatgttatcagctctacgtgtaagcgctccaggaaagaaatgtttta 380

                                                                       
Query: 181 ccgtccctgaaactgaattattaaatggggattaatgtggtgttgacttttcttcatggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgtccctgaaactgaattattaaatggggattaatgtggtgttgacttttcttcatggc 440

                   
Query: 241 tgatttgc 248
           ||||||||
Sbjct: 441 tgatttgc 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)