BAC Information

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BAC

Clone NameMSMg01-397O17
Chromosome1 (Build37)
Map Location 117,476,686 - 117,476,993
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC227506
Downstream geneCntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397O17.T7 (MSMg01no397_o17.b1)MSMg01-397O17.TJ (MSMg01no397_o17.g1)
ACCAG498145AG498146
length1,232802
length of high quality
(start - end)
---308 (155 - 462)
definitionCHROMAT_FILE: MSMg01no397_o17.b1 PHD_FILE: MSMg01no397_o17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:30 2005CHROMAT_FILE: MSMg01no397_o17.g1 PHD_FILE: MSMg01no397_o17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCTCTTGTTCTTAACACCCTGAATCACGTCTTCCTATCCAAAAAAAGT
CGCCCACACAACCCGATATTCTCAACCCCCATGGAATCACTCTCCACTCT
TGTCTTTCGCCCGGCCCGCCCGAGGCAGTTCTGTGCCCACTATGCCTTCC
GTACCTTCTACCCTACTACCACTGATTTATTTCTACATTATTCTTTGCGC
TCCGACTCCCAACGCTTAACCTTTATGTCCGATTATTGTCGATTATTCTC
TCCTCTCCCAGCAAGTACGTCCCCCTATATTTTCTGTGGTTTGTGGTAGA
TAGAGTATCTAACTATCACTTTCAGCCGCCGGTTGCTCCCCCACTCTACC
GGTTAATGCGCTTCTTGCGTCTGCGCGCGAATTCGGTACGCGAGATGTTC
AACCTCCATAACCCGACTAGTCGTAGCGTTTTATCTCGATGTATCACCTC
GCTTCACCTCGGCTATCTCATTTACCACTCCTCATTCCACCTCCCCATTC
TTACCCTGGTTTGTGTGCTTCTCTGCCTATATTCCACCACACTCACGACA
TTTCATCAGTAGGCGTGGCAGGAGCATCATCGAAGTCGCGACGTATCCCA
TCTCCCACACTGCTGATACCGCCACAGCGTCAACTCTTTCTTATCTATGC
GTATCGGCCCATTCGGGTACGGCTATCTATCATACTCTATGCATCTGCAT
CGCCCGGCGGCGTATCGTTCTCGTATCGCGCTGTGAACTCGCGCGGGTCA
CGTATCGCCTAACCACGATACTCTACGTCCGCACGCCCTCACGCACGTCC
GCTCGATCGCTGCTATCATTCTACCGCCGAGCGGCTGCGCTCTCTCGCTC
GCTCAGAGGTGCACGTGGCGCGCCGACGACACATTTCTGTCTCTGATTCT
GCCATGTTACGTTTCACCGCGTTCGCACCCTAATATGTACCACCCCGACT
CTTCTACCTCCCCGTCTCCTTCACGGCTGTGTACACTACAGTCGCCGCGC
TGGACCTTATTTACGATCTCTAGCATCCATACGCCGCCGACTCTATATCA
CGCGACGAACATTGCGATTGCGACGCCAGACGCATGCCGAGCTACCATGT
CTGAGTCGCGAACCTATTACTAGATCTCTATTCCACCGCCGCGAGGTTAT
CCTGCCCTCATCCTTCGCTTGCGGCCATTACTACTAACACTCTAGTCTCA
NCTNGCATCGATCGAATCTCTCTACTATAACG
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCTCGCCAATTCCTAACTAGCCCTTGCTTCGTATGCTAGCTGGA
GTGAATTTCTAGAGAAACAGAAGCAATGAGATGCAGGAGGCAGGGGCTAA
GAAATCCTATATCATCTAACCACCTGAAATTTTAAGATGAAGAAAGCCAA
CTAAGTAAATTCCAATGACAGCATGAAGGCCTGAAATCTGGGACCTTCGT
CTATGCATATTCTAATAAGTATCAGAGCCAGCATCATGCTTACATACCCA
AAATCACAGAGCAAATCCTTTATTGTTGATGCTTTTTATAATGTCCAGTC
CCCGAGCAGATCATGTAGTACCCCCTCACACTGAGCAGGGTGATTTTCTT
TAGTTATCTGATATTAAAAATCAAAAACAGTGACTAGAATCAACTCACAG
ATAAATCCAGAAATTATGTTTAACTAAACACTTGTGTACCCAGCAACGTA
GAACCACATGTGTCAGCAATAGCTGGTTTCATATTCCTGGCATCCGTGCT
GGGCCCCTGAGTTTGAAGCTGGGAGGGAGCCCCTCCCCAAGAAAATTTCT
GAAAATACTAAAATTGTACCTCAACCTCCCCTCCTTATCTTCTGTGGTTT
TCCCCCTTCTCTAAATTCGACCTTATGGCCACACCCCCCCGCTTCGGTTT
GCCCCCTTTTCTCAACCATACTGCTAAACCTAGTGTTTTAATTCCTTTCC
TCCCCCCCCTTACTCTTTGTCTCAACCCCCCTCCTCATTCTATGATTCTC
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_o17.g1 MSMg01no397_o17.g1 CHROMAT_FILE:
MSMg01no397_o17.g1 PHD_FILE: MSMg01no397_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:30 2005
         (308 letters)



>mm_chr1_117476486_117477193
          Length = 708

 Score =  572 bits (296), Expect = e-168
 Identities = 305/308 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctatatcatctaaccacctgaaattttaagatgaagaaagccaactaagtaaattcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctatatcatctaaccacctgaaattttaagatgaagaaagccaactaagtaaattcca 260

                                                                       
Query: 61  atgacagcatgaaggcctgaaatctgggaccttcgtctatgcatattctaataagtatca 120
           ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 261 atgacagcatgaaggcctgaaatcttggagcttcgtctatgcatattctaataagtatca 320

                                                                       
Query: 121 gagccagcatcatgcttacatacccaaaatcacagagcaaatcctttattgttgatgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagccagcatcatgcttacatacccaaaatcacagagcaaatcctttattgttgatgctt 380

                                                                       
Query: 181 tttataatgtccagtccccgagcagatcatgtagtaccccctcacactgagcagggtgat 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttataatgtccagaccccgagcagatcatgtagtaccccctcacactgagcagggtgat 440

                                                                       
Query: 241 tttctttagttatctgatattaaaaatcaaaaacagtgactagaatcaactcacagataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttctttagttatctgatattaaaaatcaaaaacagtgactagaatcaactcacagataa 500

                   
Query: 301 atccagaa 308
           ||||||||
Sbjct: 501 atccagaa 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)