BAC Information

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BAC

Clone NameMSMg01-398E04
Chromosome1 (Build37)
Map Location 73,176,456 - 73,325,231
singlet/doubletdoublet
Overlap genenone
Upstream geneMreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
Downstream genePinc, LOC672208, LOC100043291, Tns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398E04.T7 (MSMg01no398_e04.b1)MSMg01-398E04.TJ (MSMg01no398_e04.g1)
ACCAG498404AG498405
length760753
length of high quality
(start - end)
482 (32 - 513)457 (74 - 530)
definitionCHROMAT_FILE: MSMg01no398_e04.b1 PHD_FILE: MSMg01no398_e04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:56 2005CHROMAT_FILE: MSMg01no398_e04.g1 PHD_FILE: MSMg01no398_e04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,324,828 - 73,325,231)(73,176,456 - 73,176,912)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAA
TTCCAATGATTTTCTGGCTTTACTTTGTAAATCAAGGCGCAGCTTGAGCA
CGGACTGCTCTCTTCACACCTCTGCCTCATCCTGCTAATAAGAGTGTCAT
GGAGGACACCAAACCCTTTGTATACTTCAGCCATTTAAATTCCTCTCCCA
GGTGAAACCCAGATGAGTGCACAGAGTATCAATAACTGGTCAGATGGCTC
AGCAGGTAAAACCAATCGCCTGACAACCTGGGTTTGATCCCTGAAACCTA
TAGTAGCAAAAGATGAGAATCAACTCCCTGAAATTGCCCTCTCACTTTCA
CGATCATGCTGTAGAATTCGGGTACCCTTCACACACACACTGTACATGCA
CACCACCACGTATTTACCCCACACATATACACCACACATATATCAGACAT
CACACATATATACACATACACTCACAAAACTCATACATCAGGTGTCACAC
ATATATACACACAATAAATACACATGCACTCACACATCACATCCACACAT
ACACACTACTTTCCTTACACACACTATACATATCCTCCTATTCACATGCC
CACCATTTATTTACCCCATATATACCTATTTCCTTCTCACACCCACTTCC
CCCTATCCCCACCACCTCCATATTCATCTGGGAAACCCGTCTACATTTCC
CCCTTTGACCACCGCTTTCTATTGATATATTTTCCTTTCCCAATGAATTT
CCCCCCTCTG
CCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATATATATGATTTCTATGGTTCTGTGT
TTTTGAAATAGTCCATCTTGGTTCAAGAAAGGCTCAAACAACCTTCCTGC
CTCAGCCTCCAGAGTAGGTGAGTGTTTGAGCATGTACTACTGTGTCTGAT
ATGTTAATACTTCAACACAGGGAAATGGCAGGACTTTCAGAAAATACACC
CAAAGGGTTCATGGGACATATAAACTTCTTATTTTCCACAGATAAACACA
TGATCTTTAGATTTGTATATTTATGTACTGCTTTGCAGTGGTACCTCCAG
ACCACTGCTGGTCACTGCTCTTCCTCTTACGTTGCACTCAAAGTGACTGG
GACCACAGGCAGCCATGGACTTTATGACAGACCATTACAAAGCACCAGAC
TAGCAAGTTATTAATGAAAGCCAGATGATAGACCGCAAAACACGTCATCC
AGAAGGTTGATTAGCCGGAATAGAACACACAAGGCTGAAAGATGGCAGGA
GCCTGGGGTAGGAAGTAAGACTTGAAACCCTAACTCTGCTCTGATTGGCT
TATGTCATTGGATATTTCATCTCTCTTCCCCCACCCCTTCTGATCATCTA
TCAGAGGTAGAGGGCATGAGCCGGAGGTCTTTAGGGGTCTTTCCCTGCTC
CCACCAACCAAATTTTTAATCCGCTGAATCCTGAATTCCCGCTTGGAAAA
TAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_e04.b1 MSMg01no398_e04.b1 CHROMAT_FILE:
MSMg01no398_e04.b1 PHD_FILE: MSMg01no398_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:56 2005
         (482 letters)



>mm_chr1_73324828_73325709
          Length = 882

 Score =  750 bits (388), Expect = 0.0
 Identities = 400/404 (99%)
 Strand = Plus / Minus

                                                                       
Query: 36  gctttactttgtaaatcaaggcgcagcttgagcacggactgctctcttcacacctctgcc 95
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gctttactttgtaaatcaaggcgcagcttgagcacggactgctctcttcacacctctgcc 345

                                                                       
Query: 96  tcatcctgctaataagagtgtcatggaggacaccaaaccctttgtatacttcagccattt 155
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tcatcctgctaataagagtgtcatggaggacaccaaaccctttgtatacttcagccattt 285

                                                                       
Query: 156 aaattcctctcccaggtgaaacccagatgagtgcacagagtatcaataactggtcagatg 215
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aaattcctctcccaggtgaaacccagatgagtgcacagagtatcaataactggtcagatg 225

                                                                       
Query: 216 gctcagcaggtaaaaccaatcgcctgacaacctgggtttgatccctgaaacctatagtag 275
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 224 gctcagcaggtaaaaccaatcgcctgacaacctgggtttgatccctgaaacctagagtag 165

                                                                       
Query: 276 caaaagatgagaatcaactccctgaaattgccctctcactttcacgatcatgctgtagaa 335
           ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 164 caaaagatgagaaccaactccctgaaattgccctctcactttcatgatcatgctgtagaa 105

                                                                       
Query: 336 ttcgggtacccttcacacacacactgtacatgcacaccaccacgtatttaccccacacat 395
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 ttcgggtacccttcacacacacactgtacatgcacaccaccacgtatttaccccacacat 45

                                                       
Query: 396 atacaccacacatatatcagacatcacacatatatacacataca 439
           | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  acacaccacacatatatcagacatcacacatatatacacataca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no398_e04.g1 MSMg01no398_e04.g1 CHROMAT_FILE:
MSMg01no398_e04.g1 PHD_FILE: MSMg01no398_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:57 2005
         (457 letters)



>mm_chr1_73176256_73177112
          Length = 857

 Score =  799 bits (413), Expect = 0.0
 Identities = 446/457 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatatatgatttctatggttctgtgtttttgaaatagtccatcttggttcaagaaaggc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 atatatatgatttctatggttctgtgtttttgaaatagtccatcttggttcatgaaaggc 260

                                                                       
Query: 61  tcaaacaaccttcctgcctcagcctccagagtaggtgagtgtttgagcatgtactactgt 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tcaaacaaccttcctgcctcagcctccagagtaggtgagtgttcgagcatgtactactgt 320

                                                                       
Query: 121 gtctgatatgttaatacttcaacacagggaaatggcaggactttcagaaaatacacccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctgatatgttaatacttcaacacagggaaatggcaggactttcagaaaatacacccaa 380

                                                                       
Query: 181 agggttcatgggacatataaacttcttattttccacagataaacacatgatctttagatt 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 agggttcatgggacatataaacttcttattttccacagataaacacgtgatctttagatt 440

                                                                       
Query: 241 tgtatatttatgtactgctttgcagtggtacctccagaccactgctggtcactgctcttc 300
           |||| |  ||||||||||||||||||||||||||||||| |  |||||||||||||||||
Sbjct: 441 tgtacaagtatgtactgctttgcagtggtacctccagacaagagctggtcactgctcttc 500

                                                                       
Query: 301 ctcttacgttgcactcaaagtgactgggaccacaggcagccatggactttatgacagacc 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcttacattgcactcaaagtgactgggaccacaggcagccatggactttatgacagacc 560

                                                                       
Query: 361 attacaaagcaccagactagcaagttattaatgaaagccagatgatagaccgcaaaacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attacaaagcaccagactagcaagttattaatgaaagccagatgatagaccgcaaaacac 620

                                                
Query: 421 gtcatccagaaggttgattagccggaatagaacacac 457
           |||||||||||||||||||||||||||| ||||||||
Sbjct: 621 gtcatccagaaggttgattagccggaatggaacacac 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)