BAC Information

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BAC

Clone NameMSMg01-398J01
Chromosome1 (Build37)
Map Location 73,450,597 - 73,638,918
singlet/doubletdoublet
Overlap genePinc, LOC672208, LOC100043291
Upstream geneMarch4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
Downstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398J01.T7 (MSMg01no398_j01.b1)MSMg01-398J01.TJ (MSMg01no398_j01.g1)
ACCAG498637AG498638
length788776
length of high quality
(start - end)
480 (69 - 548)250 (77 - 326)
definitionCHROMAT_FILE: MSMg01no398_j01.b1 PHD_FILE: MSMg01no398_j01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:20 2005CHROMAT_FILE: MSMg01no398_j01.g1 PHD_FILE: MSMg01no398_j01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,450,597 - 73,451,076)(73,638,670 - 73,638,918)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTAACAGCTTGCCACTAGTAGGAATTTCTCAGAGCAAGTCAGGAAGC
ACTAACTCTTGATAGGGAAAACTGACTAGATTCTCTCAGGATCTTACCTA
CTACTTGCAAAGGAGAGGTCTCTAAAGTACCCACTTTGACAGCAGATTCT
AGGACTCAATTGCTTTCTCAAAATGTTCCATCATTACGCTTTATGTGAAG
ACTATTAGCATTGAAAATTATTCCAATTGGCTGTTCAACATGTCAGTTCA
ATAGACATACACACATGCACCCATATATGCACGCACACTGAATGCCTAAT
GATATCCCCGTGAAGCTACTGACTTGGGATTCCTAACTCCTAGAAATAAC
TCTATTGGGTTGAAATAGCTATGAACTATGCTTCCCTGAAATATAGGATT
AACTATTTTTCTCTATACTTTGTTGTAAGCTAATGGAAACCAAGATCATG
GGAAGTTCAGCCACTCACAAACATTCCTATTTTGAACTTGCCTTTTTGTA
TAAATTGGAATTTATATTTTGTTTTAAAGCCCACTTTAAATTGTGAGGAT
GGGATAACATTCCCAATATGTTTTTGAATCATAACTTTATTTTATTTTTT
TGGTCCTTTGGAGCGATTTTATACCAGGCTCCCTATATTAGTTTCAAGAC
AGATAATTTCCTTGTATATAACTGGCCTACTTATAAATATCCCTAGCCCC
CCACTTATATTCCTGCTATTTTATGTCCCTCTCCCCAN
TTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCCTTGAATTCGGTGTGTAAA
TGCATGTTGACTTCTGGGGTCAGTAACCTGCCTATTTCTGACTCTGAAAG
CAGCAGGTTCTTGCTAGGAGATTGATCCATTACTACTCAAAGGGTCTCAT
TTAAGCAGGAGACATCTTTATGTAACACTTTTTCAGTGTCTGCTCACAGA
CGTGGTGTAAACGTCACTTCTTCTCTTCTTTCTGGGATAACCAGACTTTA
TTAACCAAACTCAGACAGAGAACTGTATTTTTTCCAACCCACTCCCACCC
TATATTTTTTTCCCTCTGCTGTTTTTTCCTCTCTTCCACGGGTTATTTTT
TCCAACTAGGGAGACAAGGGGAATATGTATCCCAGGTAAAGTGAGGAGGG
AAGGTGCGTGGCGATGGCACAGACACTTCAAAAGGGCCCTTTGTACTCCG
GGCACATTGATTCCTGGAAATCCATTCAAGGGCCCAAAAAACCTAACCAA
GTTTTTTCGTAACGGCCCAAAAACCTGGTCTGGGAGGCCCTTCTGGGACT
CCGTGTTTTTATTAAAGCTTTATAGGGGTCAACTCGGGATTTTTTTTGGT
TGCGGTCTCTTTTTCCCCCTTGGTGGACTTTTTGGCTTTTTCTCAGTGGT
TTTCTACGGTGCTCCTCTGATGTCTCAAATTTTATTTTCCGCGTGTTGTT
TGCTTCTTTCTTACTTCCTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_j01.b1 MSMg01no398_j01.b1 CHROMAT_FILE:
MSMg01no398_j01.b1 PHD_FILE: MSMg01no398_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:20 2005
         (480 letters)



>mm_chr1_73450397_73451276
          Length = 880

 Score =  905 bits (468), Expect = 0.0
 Identities = 477/480 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagtaggaatttctcagagcaagtcaggaagcactaactcttgatagggaaaactgacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagtaggaatttctcagagcaagtcaggaagcactaactcttgatagggaaaactgacta 260

                                                                       
Query: 61  gattctctcaggatcttacctactacttgcaaaggagaggtctctaaagtacccactttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattctctcaggatcttacctactacttgcaaaggagaggtctctaaagtacccactttg 320

                                                                       
Query: 121 acagcagattctaggactcaattgctttctcaaaatgttccatcattacgctttatgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagcagattctaggactcaattgctttctcaaaatgttccatcattacgctttatgtga 380

                                                                       
Query: 181 agactattagcattgaaaattattccaattggctgttcaacatgtcagttcaatagacat 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 agactattagcattgaaaattattccaattggctgttcaacctgtcagttcaatagacat 440

                                                                       
Query: 241 acacacatgcacccatatatgcacgcacactgaatgcctaatgatatccccgtgaagcta 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacacatgcacccacatatgcacgcacactgaatgcctaatgatatccccgtgaagcta 500

                                                                       
Query: 301 ctgacttgggattcctaactcctagaaataactctattgggttgaaatagctatgaacta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgacttgggattcctaactcctagaaataactctattgggttgaaatagctatgaacta 560

                                                                       
Query: 361 tgcttccctgaaatataggattaactatttttctctatactttgttgtaagctaatggaa 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcttccctgaaatacaggattaactatttttctctatactttgttgtaagctaatggaa 620

                                                                       
Query: 421 accaagatcatgggaagttcagccactcacaaacattcctattttgaacttgcctttttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accaagatcatgggaagttcagccactcacaaacattcctattttgaacttgcctttttg 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no398_j01.g1 MSMg01no398_j01.g1 CHROMAT_FILE:
MSMg01no398_j01.g1 PHD_FILE: MSMg01no398_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:20 2005
         (250 letters)



>mm_chr1_73638470_73639119
          Length = 650

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgccttgaattcggtgtgtaaatgcatgttgacttctggggtcagtaacctgcctatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tctgccttgaattcggtgtgtaaatgcatgttgacttctggggtcagtaacctgcctatt 390

                                                                       
Query: 61  tctgactctgaaagcagcaggttcttgctaggagattgatccattactactcaaagggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tctgactctgaaagcagcaggttcttgctaggagattgatccattactactcaaagggtc 330

                                                                       
Query: 121 tcatttaagcaggagacatctttatgtaacactttttcagtgtctgctcacagacgtggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tcatttaagcaggagacatctttatgtaacactttttcagtgtctgctcacagacgtggt 270

                                                                       
Query: 181 gtaaacgtcacttcttctcttctttctgggataaccagactttattaaccaaactcagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gtaaacgtcacttcttctcttctttctgggataaccagactttattaaccaaactcagac 210

                    
Query: 241 agagaactg 249
           |||||||||
Sbjct: 209 agagaactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)