BAC Information

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BAC

Clone NameMSMg01-398J08
Chromosome1 (Build37)
Map Location 19,887,547 - 19,887,738
singlet/doubletsinglet
Overlap genenone
Upstream geneEG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
Downstream genePkhd1, Il17a, Il17f, Mcm3, Paqr8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398J08.T7 (MSMg01no398_j08.b1)MSMg01-398J08.TJ (MSMg01no398_j08.g1)
ACCAG498651AG498652
length786797
length of high quality
(start - end)
97 (128 - 224)191 (130 - 320)
definitionCHROMAT_FILE: MSMg01no398_j08.b1 PHD_FILE: MSMg01no398_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:21 2005CHROMAT_FILE: MSMg01no398_j08.g1 PHD_FILE: MSMg01no398_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATCGGCAGTCGCGNGGAANCAN
GNANATACCTTCGATTGGGAGAAGGNAGAANNAGGAAAGAACANNNAAGN
ANAGNACAAGTTTATACCCTGGATAAGTTGGATAAGTAGCATACTGCTGT
ATACCTCCTATGTGCTCCTTTTTAGGAAAATGAGATGTTGCTCCTTTAGC
AAACGGCCTATGCAACTGATATTTGGGTTTTATCTCGCAGCATTTTTTTT
AGTCTTCAAAATGTCCTACCACTATAAATCAACTGGTAGAGCGCATACTT
CACCGCGCCCTATTTTTTTTTTATGACGACACAAGCCACGCACCCCGGAG
CGAGAGCACACCCCCACCACACCCGCACATGCGCGCAGGAGGATGAAGAA
AAGAATTTTCCCCCCCCTTTTGTATAAAATTGCCTTTGATGCCACCCTGG
TCTACCTTCCCTAGATTTCCACTCCTCCTTGGCTTTGTGATTACCTAATC
TTTATCCCCCGCCTCACTACTGAAGCATTCCTAGTTCTCTTCCTTCGCCC
TAGCCTCTCCCTACCGTTCCCTTCCCCCTGGTCTCTTCGCACAATTTCTC
ACTTTTTCCTCCCTCTCTTCTCCCCTCTACTTGCGTTTCTATTGCTTTTC
CTATTTCCTTCCTCTTTTTTTTTTTTTTGTCATCGTCCCCCCTTATTTCT
TCTTCCCTATATTTCCTCTCCCCTGCTTTTCTTTTCCCTCCTTTCCTAGC
CTCTTTTTTCCCTCTTTTCTCTTCCGCTCTCGCCCT
TCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCCGGAATACAGATACCCAANAAGCAACATTAAG
TCTAATGTTTTGAAGCATGATTTTACCGTACAGAAGACCTCAAGATGCTC
CACATCTCATTGAGGTGAGAACTCATCTTATGCTTGCATCATTTAATTGA
GTGAACAAACTTTGAGGTCTATAATTTATCTCACAAAAAGATTACCAATA
AATTTTTATCTCAGTGAAACAAAACACATATAATTGCAGGCATGGGAGTA
AAACCAAGAAATTAGCATACCTTTTGTCCTATAGNGAACATCTTATGAGA
CGAGNATGACGATATGAGTTTACCTCATACAGTGTCAGGAAGAAAGAAAC
CTAGTATAAGCTTATTTCTCCCCCCCCCAATCCCTATTTATGATCCTGTA
ATGTATCCTTTGTCCTGTCAGCTTGCATTACCCTGACAAGCTAAATTCTT
TTTCTTCCTCTTCAGACGACGATAGACCGCCCTCCGCTATTACCAGCAAC
CTGTCTTACGTGCCGCCTTCTGCTTCGCCTTTTTTACACTCTTCTCTCAT
TATTTTTTTGTACCTCCTCTCTTTTTCAGTCTTTCTCACCCCCTCTGTAC
ATTCTACATCTCTCGCCACTTCTTTTTTTTTTTTTTTCTCTCTTTCCCCT
CCCCCTTCTTTACCGTCCTGTTCCCACTCTTGCTCCTTTTAATCTTTGTT
CTTTCTCCTTCTTCTACCTATTCTCTCTCATTACCTTATAACCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_j08.g1 MSMg01no398_j08.g1 CHROMAT_FILE:
MSMg01no398_j08.g1 PHD_FILE: MSMg01no398_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:21 2005
         (191 letters)



>mm_chr1_19887347_19887938
          Length = 592

 Score =  348 bits (180), Expect = e-100
 Identities = 189/192 (98%), Gaps = 1/192 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagaagacctcaagatgc-tccacatctcattgaggtgagaactcatcttatgcttgca 59
           ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 acagaagacctcaagatgcttccacatctcattgaggcgagaactcatcttatgcttgca 260

                                                                       
Query: 60  tcatttaattgagtgaacaaactttgaggtctataatttatctcacaaaaagattaccaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatttaattgagtgaacaaactttgaggtctataatttatctcacaaaaagattaccaa 320

                                                                       
Query: 120 taaatttttatctcagtgaaacaaaacacatataattgcaggcatgggagtaaaaccaag 179
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaattttgatctcagtgaaacaaaacacatataattgcaggcatgggagtaaaaccaag 380

                       
Query: 180 aaattagcatac 191
           ||||||||||||
Sbjct: 381 aaattagcatac 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 592
Length adjustment: 8
Effective length of query: 183
Effective length of database: 584
Effective search space:   106872
Effective search space used:   106872
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)