BAC Information

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BAC

Clone NameMSMg01-399B11
Chromosome1 (Build37)
Map Location 9,298,145 - 9,298,383
singlet/doubletsinglet
Overlap genenone
Upstream geneSntg1, LOC100039474, LOC620444, EG665007, LOC665103, LOC100039464
Downstream geneEG620853, LOC665138, Rrs1, Adhfe1, LOC620542, 3110035E14Rik, Mybl1, Vcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399B11.T7 (MSMg01no399_b11.b1)MSMg01-399B11.TJ (MSMg01no399_b11.g1)
ACCAG499039AG499040
length705723
length of high quality
(start - end)
554 (41 - 594)242 (84 - 325)
definitionCHROMAT_FILE: MSMg01no399_b11.b1 PHD_FILE: MSMg01no399_b11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:01 2005CHROMAT_FILE: MSMg01no399_b11.g1 PHD_FILE: MSMg01no399_b11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAGAGGATCCGCGGA
ATTCTTGTTGCCACTTATATATACTATCATATGATCTGCAAATAGTGATA
TTTTCATTCTGTCCTTTCCAATTTGTATCCCTTTGATCTCCTTTTGCTTT
CTAATTGTTCTAGCTAGAACTTCAAGTACCATATTGAATAGATAGGGAGA
GAGTGGGCAGCCTTGTCTAGTCCCTGATTTTAGTGGGATTGCTTTAAATT
TCTCTCCATTTACTTTGATGTTAGCTACTGGTTTGCTGTATATTACTTTT
ATTATGTTTAGGTGTGGGCCTTGAATTCCTGAACTTTCCAAGAATTTTAT
CATGAATGGGTGTTGGATTTTGTCAAATGCTTTCTCAGCATCTAGTGAGA
TGATCATGTGCACCACGTGATTTTTGTCTAGAAGTTGGTTTATATAGTGG
ATAATGTTGATGGCTTTCCTTATATTAAACCATCCCTGCATCCCTGGGAT
ATAGCCTACTTGATCATGATGGATGATTGTTTTGATGTTTTCTTGGAATA
GGTTTGTGAGAATTTTATTGAGTATTTTTGCACTGATATTAATAAGGTAA
ATTGGTCTGAAGTTGTCTTTCTTTGTTGGGCCTTTGGGTGGTTTACGTAT
CAGAGTACTTTTGTTTTCATGTAACGCCTCGCCCAGAGTACCCTCTGTTT
CTGTC
CATCCTCTGGATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGAAAGCAGAACTAG
GCATCTTGGTGTGCTAGGGTTGATGTCAGGTACAAACATTGACACTCTGT
TTCCCAGCCTTTCTCTGAGTTGGCTTGCTGTTTCAAACATTTAATGAAAC
AACCAGGAAAAGATAGCTCTGATACCCATTCAGCAAGCTCATCTGGAAAA
TATTTATTGATTGTATATTGTGTTTACTAAGGAATGATGGAAGGGCAGCT
GGAATCTGAGGGTCTGTGAATCTCTTTTATAGATACAGACTCAAGAATTA
TTCATAACAGATGCTCATCAAAGGATGCTCATGCTATCTCTCTGTAGTAA
GGTGGATGGAAATAGTCACATCCCCCTTCCTTAGCACATGCTTCTAGACT
TTAAACTGAGACTTCTTTGTAATATCTTCTTTTTGCTTTAGCTCATATGA
ATTGACATTTACAAACAATTACCTTCTCTGATAATATAACGTGTGTGTTC
TCTCAGGATGTCAAGGTCCTACGCCCTAGCTGATTTCCTTAATAAGTACA
GTAGACTACTCTTTGCACAATATATTTCTTCTCAAGTCGCAGATTCTATG
TCCATTGTCTTAGTATAATCCTACTGCGTCCTCACTTATATTCCTTTCAT
TCTCCCTATTCCCCCTATTTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_b11.g1 MSMg01no399_b11.g1 CHROMAT_FILE:
MSMg01no399_b11.g1 PHD_FILE: MSMg01no399_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:01 2005
         (242 letters)



>mm_chr1_9297943_9298584
          Length = 642

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaaagcagaactaggcatcttggtgtgctagggttgatgtcaggtacaaacattgacac 62
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaaagcagaattaggcatcttggtgtgctagggttgatgtcaggtacaaacattgacac 262

                                                                       
Query: 63  tctgtttcccagcctttctctgagttggcttgctgtttcaaacatttaatgaaacaacca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tctgtttcccagcctttctctgagttggcttgctgtttcaaacatttaatgaaacaacca 322

                                                                       
Query: 123 ggaaaagatagctctgatacccattcagcaagctcatctggaaaatatttattgattgta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggaaaagatagctctgatacccattcagcaagctcatctggaaaatatttattgattgta 382

                                                                      
Query: 183 tattgtgtttactaaggaatgatggaagggcagctggaatctgagggtctgtgaatctc 241
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tattgtgtttactaaggaatgatggaagggcagctggaatctgagggtctgtgaatctc 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)