Query= MSMg01no399_c21.b1 MSMg01no399_c21.b1 CHROMAT_FILE:
MSMg01no399_c21.b1 PHD_FILE: MSMg01no399_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:07 2005
(657 letters)
>mm_chr1_148276057_148277113
Length = 1057
Score = 1149 bits (594), Expect = 0.0
Identities = 639/663 (96%), Gaps = 18/663 (2%)
Strand = Plus / Plus
Query: 6 gaattcctgaata-----tttcctcataggacaaagttctaaaatttgaaatatatattt 60
||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgaataaaaaatt----cataggacaaagttctaaaatttgaaatatatattt 260
Query: 61 aaagagttctttcattctttcagcttcagaagaaattctgttgaattttcagtgattatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagagttctttcattctttcagcttcagaagaaattctgttgaattttcagtgattatt 320
Query: 121 tacataaatatcgacgtctgtttaaaccctgtgccaaatgatttatgattttaaagtaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacataaatatcgacgtctgtttaaaccctgtgccaaatgatttatgattttaaagtaat 380
Query: 181 tgcaaagtggtacgtgcaagtgtgtaagtgtggatacacgatgtatcagatacagaagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcaaagtggtacgtgcaagtgtgtaagtgtggatacacgatgtatcagatacagaagat 440
Query: 241 gagtgaacttctgtgctcaaaaccttcccctcatgatttttatttgaaaataatttagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtgaacttctgtgctcaaaaccttcccctcatgatttttatttgaaaataatttagaa 500
Query: 301 ttagagtaaatttaatttaaaaaataggcatatagttttaaacatacacaaacatgaata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttagagtaaatttaatttaaaaaataggcatatagttttaaacatacacaaacatgaata 560
Query: 361 tattagttaacattttctcttgacttagatattcatgaatctaagttccatgtaaatatg 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattagataacattttctcttgacttagatattcatgaatctaagttccatgtaaatatg 620
Query: 421 aatgtattttattgagattgaaataacattcttttaagacataaaaagaattgttctata 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatttattttattgagattgaaataacattcttttaagacataaaaagaattgttctata 680
Query: 481 ggaaaagagtatatgagtatacttcagaattcaccatgtcacatttctaaaaattccctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaaaagagtatatgagtatacttcagaattcaccatgtcacatttctaaaaattccctc 740
Query: 541 ccccaacagacagagagagagagagagagagagagagagaga-a-----agaaaataccg 594
|||||||||| ||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct: 741 ccccaacagagagagagagagagagagagagagagagagagagagagagagaaaatacag 800
Query: 595 ataaaaaagcatccatcanaacaaactaagaaacacaacaacatgtacatactaacactt 654
|||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||
Sbjct: 801 ataaaaaagcatccatcaaaacaaacaaagaaacacaaca---tgtacatactaacactt 857
Query: 655 act 657
|||
Sbjct: 858 act 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no399_c21.g1 MSMg01no399_c21.g1 CHROMAT_FILE:
MSMg01no399_c21.g1 PHD_FILE: MSMg01no399_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:07 2005
(345 letters)
>mm_chr1_148426666_148427414
Length = 749
Score = 617 bits (319), Expect = 0.0
Identities = 340/349 (97%), Gaps = 4/349 (1%)
Strand = Plus / Minus
Query: 1 catgcctgtttttgccttcttgcaaggctccttatatcagtttattcatc----aaaaaa 56
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 549 catgcctgtttctgccttcttgcaaggcttcttatatcagtttattcatcaaaaaaaaaa 490
Query: 57 aaaaaagtgggagaggaggcattgctgatttgtttgtgaacaccacgaaacaccagcctt 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aaaaaagtgggagaggaggcattgctgatttgtttgtgaacaccacgaaacaccagcctt 430
Query: 117 tgtttttggtacccatagccaactgcattaagttaaaatagaacacaatattacttaagt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgtttttggtacccatagccaactgcattaagttaaaatagaacacaatattacttaagt 370
Query: 177 actctaaagtgtgaaattaaaagcctccttagagattagcttcaaacagatttattccct 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 actctaaagtgtgaaattaaaagcctccttagagattagcttcaaacagatttattccct 310
Query: 237 gataattaacactcccattaaaatgtgcttcatattaaattgtttggtctgcgtataaca 296
||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 309 gataattaatactcccattaaaatgtgctttatattaaattgtttggtctgtgtataaca 250
Query: 297 tctcgtaacacaaatatgaaattaagatagcaaaataataatgaataat 345
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tctcgtaacacaaatatgaaattaagatagcaaaataataatgaataat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 749
Length adjustment: 9
Effective length of query: 336
Effective length of database: 740
Effective search space: 248640
Effective search space used: 248640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
