BAC Information

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BAC

Clone NameMSMg01-399L19
Chromosome1 (Build37)
Map Location 128,359,713 - 128,360,056
singlet/doubletsinglet
Overlap geneE030049G20Rik
Upstream geneSlc35f5, Lypd1
Downstream geneLOC383559, Mgat5, LOC667090
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399L19.T7 (MSMg01no399_l19.b1)MSMg01-399L19.TJ (MSMg01no399_l19.g1)
ACCAG499528AG499529
length727869
length of high quality
(start - end)
344 (68 - 411)179 (74 - 252)
definitionCHROMAT_FILE: MSMg01no399_l19.b1 PHD_FILE: MSMg01no399_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:50 2005CHROMAT_FILE: MSMg01no399_l19.g1 PHD_FILE: MSMg01no399_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAGAGGATCCGCGGAA
TTCCAAATTAGCCGAAATGGTTTACTCCTTTGAGGCAGTGAATGTGACAG
TTGGGCTTGCTTTAATTCCGTTGACCGCTGGCAACAAACGCTAGACAGGA
CTAGTCACTCAGCCTGTCTGTCATATTGAATTAATATGCAAATCATACAT
ACATTAAAATAAAGAATGGTATTTTTTTTTAAACACGGGAAACTGCAACT
TATCCTAGAGGTAGGCAAGAAAAGAATCAAAATGTAATTTTACATTCCCC
GGAAGTTTGAAAAGATCAACTTTGCCTTTCTGAAGAATGGCCAAATCTTA
AGGAGAGAACCAACATATTGTGAACATTTTTATGCACGGTAAACAATGAA
GCTTCTGAAACCAACCCTTTAGATGGATACTGAGGAACATCCTTAAGGTC
AAGCAACAATTAGAAGCATCAATCACGAGTTATAGGCCACATCCCAGGAT
GTATGTGAGGTCCTGGATGGATCCCTTCTGAACGCAAGTTCACCTGGACT
TCACCTTCCAGCTCAGTGGTGATTTAGTCCGCCCTCATTATTCACACAGC
CCACACTTATTGATTGGTCTACCTACTGGATAAAGGAAATGAGCAACATC
AAAATCACCAAGCTTCAGCTTCCTGGGGATTTTGTAGGATGAATAGTGAA
GGCACAATGTCCCTGTGTACTTGTTCC
CTTCCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTGACAGCGGAATTCTGTAAATCTCCAGTCAGAAAG
GCTGAGGCATTTCAGGAGTGAAGAGGAATTTTCTGGGGTGACTTTGTCAA
TCACAGTGAATACTTTATTTTTTGTTCTTTCACTTTGTAATTTTATGGTA
GTTTTTTGTTTTGTTTTTGTTTGTTTGTTTTTAATGTTAAGTAGTAGGTT
CAGTGTTTTGAGGTCTTTTTTTTTTTTTTACCCCCACACTGTACTCCCCC
CCTTCTCGCACTCACACACTTTTTTTTTTTTTTTCCCCGTGTGTTTCTAC
CCTGCGTGTTTCTTCCTCCTTTCTCCCTCCCCCTCTTTTTGCTCCTTTCT
CCTATTGATTTCTTCTTTTATTTTTTTTTTCCCCCCCCCCTCGTTCTTTT
CCCTACTACACCCCTTTCCCCTTTGCCTGTTTATTCTTTTTTTCTTCTCC
TCTTCTTTTCCCCTTTCTCCGCTTGTCCCATCCCCTTTTCTTTTCTCGTT
AGTGTTTTCCCTTCATCCTTTCCTCTCCCCTATTTTATTTTTTTTCCCCC
CTCCCTTTCTTTCCCTCTTTCCCCTTTTTTTTTTTTCTGTCACTCCGTTT
TTTTCCCCTTTTTTTTTTCTCTTATTTTCCCTCCGCACGTCTCATATCTT
CGTTTTTATTATTCGCCCTTACGTCTTCAGTATTTTATTCTTTCATACGT
CTTCTATCTTCTCGTTCCCCCATCACTTTCTTTTTCTTATTACCCTTACT
TCCTCTTTGTTGCTCCTTTCTGTTCGTCTCCTCCTTTGCCTTCCTCTCCC
TATTCCATATTTTTCTCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_l19.b1 MSMg01no399_l19.b1 CHROMAT_FILE:
MSMg01no399_l19.b1 PHD_FILE: MSMg01no399_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:50 2005
         (344 letters)



>mm_chr1_128359513_128360257
          Length = 745

 Score =  627 bits (324), Expect = 0.0
 Identities = 339/344 (98%), Gaps = 1/344 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtttactcctttgaggcagtgaatgtgacagttgggcttgctttaattccgttgaccg 60
           |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtttactcctgtgaggcggtgaatgtgacagttgggcttgctttaattccgttgaccg 260

                                                                       
Query: 61  ctggcaacaaacgctagacaggactagtcactcagcctgtctgtcatattgaattaatat 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggcaacaaatgctagacaggactagtcactcagcctgtctgtcatattgaattaatat 320

                                                                       
Query: 121 gcaaatcatacatacattaaaataaagaatggtattttttttt-aaacacgggaaactgc 179
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 gcaaatcatacatacattaaaataaagaatggtattttttttttaaacacgggaaactgc 380

                                                                       
Query: 180 aacttatcctagaggtaggcaagaaaagaatcaaaatgtaattttacattccccggaagt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacttatcctagaggtaggcaagaaaagaatcaaaatgtaattttacattccccggaagt 440

                                                                       
Query: 240 ttgaaaagatcaactttgcctttctgaagaatggccaaatcttaaggagagaaccaacat 299
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 ttgaaaagatcaactttgcctttctgaagaatggccaagtcttaaggagagaaccaacat 500

                                                       
Query: 300 attgtgaacatttttatgcacggtaaacaatgaagcttctgaaa 343
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgtgaacatttttatgcacggtaaacaatgaagcttctgaaa 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 745
Length adjustment: 9
Effective length of query: 335
Effective length of database: 736
Effective search space:   246560
Effective search space used:   246560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)